Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0649 ATGGCGGGTGGTGGTGGTGGTGGGTTTGATGGTTTTGGGGGCTTGGGAAGTGGCTTTGGGTGCGGAAATTTCCAAAGCCACCATCCTGTTTACCGTCCAAGTCCACCATTAACGGCCATAGACAGGTTCTTGGTGGGTCAGAGCCATTTCTCACAGAGGCAGACTCAGAACTCCGAAAGGAACAGTGGAGACGTAGTTTCAAGTAACGGGTTTCATGATTTTTACTCAGCAAGTGGTGCAATTGGTAGCATTGGAAGTGGGGGTTCATGGCAGTTTCTGGAAGAGGATGGTCTGAATTTGAAGGAGAAGAAGAGTTCAGAAGTGGTTCAGAGCGGAGAAGAGAAGGTGGCGAAGAGAAGTTCAAGAGCGAGCGGTAAGAGAGCGAAAGGTGGCTCTTCCGCAACTCTGATTAAAGGGCAATGGAGTGCAGAAGAGGATAGGCAACTGTTGAGGTTGGTGAACGAGTTTGGCGAGAAGAAATGGGCTCAAATAGCTAAGAAGCTGGGCGGGAGGGCAGGAAAACAGTGCCGAGAGAGATGGCACAACCATCTGCGTCCTGATATCAGGAAAGACGAATGGGATGAAGAAGAGGAAAGAATATTGATTGAGTGGCACAAGAAGGTGGGCAACAAATGGGCTGAAATTGCCAAACGCATCACTGGTAGAACCGAGAACACCATCAAGAACCATTTTAATGCCACAAAGAGAAGGCAAGACTCGAGAAAAAAGAGCAACAAGGATGATCAAAAACCTCAATCTACTCTCCTCCAAGTTTATATCAAAAGCAAGAAACTAGACGATAAATGGACCACCACCACCACCACCCAAAACGCCACCGCCACACCCACATCCTCCACCATCTCAGAGGATCTACCCACCACCCATTACAAAGCTTTCCTCCAAGATTTTTCTGAATCAACCGTCCATGATTCTCCATCCCTCATGACTCAGACATGCGATGAAGAGTTACTATTCATGCAAAACCTATTTTCAAGTGACTGCGGTAATCCACCATTTGTGGGCACCTCCGAAAACATTAGCTCCAAGGGAGCAGAAGAACCAATAGAAGAACAAGATGACATGGCTTTGGACTCTTTTGATTTGTTCCAAGCCAGTGGCTCAGCTGAATGTGGGTCTACTTCCATTCAAGGAAAGGCTTCGTCGACCCATCTTCACTCAGATATTTACATATCCAATCTGCTGAATGGAACTTCAACTCCATCATCAGCTTCCATTGATCATTACTACAGCTATAATATTAACCCCATGAACGTAGAGTTTCTCACAGATCCACCTTCTTCTTCAAGTGGAAAGAGAGAGATGGATCTGATAGAGATGCTCTCTTGCTCTGGGTTCTGCAACCAGGGCACTCACACGAATTTGTAA 1386 0.4661 MAGGGGGGFDGFGGLGSGFGCGNFQSHHPVYRPSPPLTAIDRFLVGQSHFSQRQTQNSERNSGDVVSSNGFHDFYSASGAIGSIGSGGSWQFLEEDGLNLKEKKSSEVVQSGEEKVAKRSSRASGKRAKGGSSATLIKGQWSAEEDRQLLRLVNEFGEKKWAQIAKKLGGRAGKQCRERWHNHLRPDIRKDEWDEEEERILIEWHKKVGNKWAEIAKRITGRTENTIKNHFNATKRRQDSRKKSNKDDQKPQSTLLQVYIKSKKLDDKWTTTTTTQNATATPTSSTISEDLPTTHYKAFLQDFSESTVHDSPSLMTQTCDEELLFMQNLFSSDCGNPPFVGTSENISSKGAEEPIEEQDDMALDSFDLFQASGSAECGSTSIQGKASSTHLHSDIYISNLLNGTSTPSSASIDHYYSYNINPMNVEFLTDPPSSSSGKREMDLIEMLSCSGFCNQGTHTNL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0649 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 239 IPR017930 -
Vvi6g0649 461 PANTHER MYB PROTEIN-RELATED 126 253 - -
Vvi6g0649 461 ProSiteProfiles Myb-like domain profile. 185 235 IPR001005 -
Vvi6g0649 461 FunFam Transcriptional activator Myb isoform A 137 190 - -
Vvi6g0649 461 SUPERFAMILY Homeodomain-like 136 231 IPR009057 -
Vvi6g0649 461 MobiDBLite consensus disorder prediction 223 253 - -
Vvi6g0649 461 CDD SANT 192 235 IPR001005 -
Vvi6g0649 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 188 IPR017930 -
Vvi6g0649 461 MobiDBLite consensus disorder prediction 103 134 - -
Vvi6g0649 461 ProSiteProfiles Myb-like domain profile. 133 184 IPR001005 -
Vvi6g0649 461 Pfam Myb-like DNA-binding domain 141 198 - -
Vvi6g0649 461 Gene3D - 137 189 - -
Vvi6g0649 461 Gene3D - 191 264 - -
Vvi6g0649 461 MobiDBLite consensus disorder prediction 223 249 - -
Vvi6g0649 461 MobiDBLite consensus disorder prediction 103 121 - -
Vvi6g0649 461 CDD SANT 141 184 IPR001005 -
Vvi6g0649 461 SMART sant 137 186 IPR001005 -
Vvi6g0649 461 SMART sant 189 237 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0649 Vvi-Chr6 7063507 7065748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0649 34 450 MYB Transcription Factor Family AT5G11050 37.358 4.49e-74 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi6g0649 Myb_DNA-bind_6 5.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0649 K09422 - vvi:104879608 876.315