Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0646 ATGGATTCTCGCAGTAGATCGCGAAATGCTCTCTCGTCTTCGTGGTTTTATCTGAAAAAGATCTTCGCTTCCAAGCCATGTACGGCGAGTATGGACACGCAACCGGCGACGGCGACGGTGTCTTCCGCCAGATCGTCCCTGCACTCCGTGGTCTCCGTTGTACTGCCTGAAATGATGGTTGTGTCGGATCCTCAACGCAAAGTCCCGACTGCGACTCGCCCGGAGTCCGATATCTCCGCCGACCATCAGTTCTTTCCTCTCCGAAACGATATCTTTCCGTGCCCGGCATGCGGCGAAGTCTTTCAGAAACCGCAGAATCTCGAACAGCATCAAGCCCTGAAACACGCGGTTTCGGAGCTCATTGACGGAGATTCAGGGAATAACATAGTCCGGATCATATTCAAAACCGGTTGGACCGACAGTGAAAAGATACCGAAAATTCAGCGGATCTTGAAAATCCACAACAGCTCGAAAATACTGGCGAGGTTCGAAGAGTACAGAGAGTCTGTAAAATCCAAAGCGGCGAGAAACGGCGCCGTTCGGAGACGCGACGAGAGGTGCATCGCCGACGGCAACGAGCTCCTGAGGTTTCACTGCTCGACGTTCCTATGCAATTTGGGGCAAAACGGAAACTCCAGCGTCTGCAACCACCAGTACTGCAGCGTCTGTGGGATCATCAGAACCGGATTCTCACCCAAGTTGGACGGAATCTCCACGCTATCCACCAGCTGGAGAGCACACGCCACGATCCCGGAGGACATCGAAGACGAGTTCAGGTTCATGAATGTGAAGAGAGCGATGCTTGTGTGCAGAGTGGTGGCCGGCCGAATCGGAAGCGACCAGGACGAAGTGGATAAGGAGGACGGCGGATTCGATTCAGTGGTGGGCAGAAGCGCCATAGGCGGCGGCGGATCGCTGACAAGGTTGGTGGACGACGAAGAGTTACTGGTATTCAACCCAAGGTCTGTGCTACCTTGCTTTGTAATAGTATACTCTGTGTGA 1002 0.5369 MDSRSRSRNALSSSWFYLKKIFASKPCTASMDTQPATATVSSARSSLHSVVSVVLPEMMVVSDPQRKVPTATRPESDISADHQFFPLRNDIFPCPACGEVFQKPQNLEQHQALKHAVSELIDGDSGNNIVRIIFKTGWTDSEKIPKIQRILKIHNSSKILARFEEYRESVKSKAARNGAVRRRDERCIADGNELLRFHCSTFLCNLGQNGNSSVCNHQYCSVCGIIRTGFSPKLDGISTLSTSWRAHATIPEDIEDEFRFMNVKRAMLVCRVVAGRIGSDQDEVDKEDGGFDSVVGRSAIGGGGSLTRLVDDEELLVFNPRSVLPCFVIVYSV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0646 333 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
Vvi6g0646 333 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 13 331 - -
Vvi6g0646 333 Gene3D - 123 332 - -
Vvi6g0646 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 120 IPR013087 -
Vvi6g0646 333 SUPERFAMILY ADP-ribosylation 117 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0646 Vvi-Chr6 7024324 7025325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0646 15 333 C2H2 Transcription Factor Family AT2G29660 58.232 1.17e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g0646 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0646 - - vvi:100248366 651.744