Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0631 ATGAAGTGGGAAATGGAAATTCTCTCCCCAGCATCCTATCTTTCCAACTCCAATTGCCTGCTAGAAGAGAGCAAGAGCTCAAGATGGACTCCAGAAGAGAACAAGACGTTTGAGAATGCTCTTGCAGTCTACGATAGGGACACACCGGATCGATGGCAGAAGGTGGCTGCCATGATCCCAGGAAAGACTGTTGGAGATGTTTTCAAGCAGTACAAAGAACTGGAGCTTGATGTTGGGAAAATAGAAGCTGGGCTGGTCCCAATTCCTGGTTATAGCACCTCTCCTTTCACATTGGAGTGGACTACCAATCATGGATATGAAGGGTTGAAGCAGCCCTATGGACTTGGTGGAAAGAGACCTTCATCCACCAGGCCAACTGATCAGGAAAGGAAGAAAGGGGTTCCATGGACAGAAGAGGAGCATAAGCTGTTTCTATTGGGCCTTAAAAAATATGGCAAAGGGGACTGGAGAAATATCTCGCGCAATTTCGTTGTCACCAGAACGCCAACTCAAGTGGCTAGTCATGCTCAAAAGTACTTTATCAGGCAGCTTTCAGGAGGGAAAGATAAGAGAAGAGCCAGCATCCATGACATAACAACAGTCAATCTCACCGACACTCGAACACCTTCACCAGAAAATAAAAGACCTCCTTCGCCAGATCAGTCCATTGGGGTTCCCAAGCAGCCCAATTCTGCTCCCATGAATAGAACAACTTTTCAATGGAGTCAACCAAATAGTGGAGCACCCATGGCATTCAATCCGACACATGGAAATATTTTCATGTCCTCTCCTTATGGAATGAACTCATATGGGCTTAAAATGCAGGGCCAAAATCTGCATAGAGCTGCCTTTAATGAATCCTACATTGGACCTCAAAGTATGGTTTTTCAGATGCAATCCACCCCGCACTTTCCTCATGGATGA 924 0.4589 MKWEMEILSPASYLSNSNCLLEESKSSRWTPEENKTFENALAVYDRDTPDRWQKVAAMIPGKTVGDVFKQYKELELDVGKIEAGLVPIPGYSTSPFTLEWTTNHGYEGLKQPYGLGGKRPSSTRPTDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTDTRTPSPENKRPPSPDQSIGVPKQPNSAPMNRTTFQWSQPNSGAPMAFNPTHGNIFMSSPYGMNSYGLKMQGQNLHRAAFNESYIGPQSMVFQMQSTPHFPHG* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0631 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Vvi6g0631 307 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Vvi6g0631 307 SUPERFAMILY Homeodomain-like 27 76 IPR009057 -
Vvi6g0631 307 MobiDBLite consensus disorder prediction 109 135 - -
Vvi6g0631 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Vvi6g0631 307 FunFam transcription factor MYB1R1 134 185 - -
Vvi6g0631 307 MobiDBLite consensus disorder prediction 197 211 - -
Vvi6g0631 307 Gene3D - 21 88 - -
Vvi6g0631 307 MobiDBLite consensus disorder prediction 190 246 - -
Vvi6g0631 307 CDD SANT 135 180 IPR001005 -
Vvi6g0631 307 CDD SANT 28 74 IPR001005 -
Vvi6g0631 307 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Vvi6g0631 307 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Vvi6g0631 307 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Vvi6g0631 307 Gene3D - 134 184 - -
Vvi6g0631 307 FunFam Transcription factor SRM1 21 88 - -
Vvi6g0631 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 273 IPR043363 -
Vvi6g0631 307 SMART sant 25 77 IPR001005 -
Vvi6g0631 307 SMART sant 132 182 IPR001005 -
Vvi6g0631 307 MobiDBLite consensus disorder prediction 224 246 - -
Vvi6g0631 307 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Vvi6g0631 307 SUPERFAMILY Homeodomain-like 130 183 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0631 Vvi-Chr6 6897468 6898747 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi6g0631 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0631 - - vvi:100244960 637.876