Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0623 ATGAAGCACATCTCCGAGATGGAGCGACCATCAACGCCACATAAGTACCATCAGAAGAATCAGTCTGCCTTGAACTATATCAAAGCTGCAGCCAAGAAATTGGCAGGAGTTTTCTCAACCTTGGCTTTTCTCACCCGCCCAACGAAGACCGCCTCTAAGGGAGCTCCTGCCACACCTGATGGCAGCAGAAACTATGGCCAACCTCCTGGGATTTCCTGCAGTAACAATAAGAGATCATCAAGGTTCAAGTACTCTGACTCCTATGGCTCTTCCAATGCTGCAAGTGGGCAGCTGGTTACAGAGAATTTCTCCATTGAAGAGATCAACAAAGCAACCCAAAATTTCTCCCAGGCAAATAAAATTGGAGAAGGCGGGTTTGGAACGGTGTATAAAGGGAGGCTCGGGAATGGATCCCTCGTTGCTATAAAGCGTGCAAAGAAGAACATGTATGACAAGCGCTTATCACAAGAGTTCAAGAATGAAATCCTTACATTGTCGAGGATCGAGCATCTGAATTTGGTGAAGTTATTGGGATATCTGGAGCATAAAGATGAAAGGATTATCATAATTGAATATATTGGCAATGGAACACTAAGGGAACATCTGGATGGTACTCAAGGGCTTGAAATTGCAGAGCGTCTGGACATTGCAATTGATGTAGCTCATGCAGTTGCATATCTACACATGTACACAGATACTCCCATAATCCATAGAGACATCAAAGCATCAAACATCCTTATCACAGAGAAACTACGTGCCAAAGTAGCAGACTTCGGGTTTGCACGGTTGGCAGCAGAGGATCCAGGTGCCACTCACATTTCAACTCAGATCAAAGGAACAGCAGGCTATTTGGACCCGGAATACCTCAGGACATATCAACTTACTGAGAAGAGCGATGTTTACTCCTTTGGGGTGTTGCTTGTAGAAATGGTGACAGGAAGACACCCCATTGAATCAAAGAGACCGCTCAGTGAGAGAGTGACCACAAGATGGGCAATGGAGAGACTGAAAGAAGGGGATGCAGTACTTGCTATGGATCCAAAACTGCGAAGGAATCCAGCATCAAACCAGGCAGTTGAGAGAGTCCTGAAACTCGCTCGCCAATGCCTTGCTCCTCTCAGACAATCAAGACCCTCCATGAGGAAATGTGCTGAAGTTTTGTGGGGAATCCGAAAGGATTTCAGAGAGAAAGCTTTCTCTTATTCTCCTTGTCCTAGCTCTCACCGTTCTGATAATTTTCTCAATAAAGACGCGAGAAAGAATCGCCACCATGCTTTCGGCCTAGAAGATTGTGACAACTACAAATTTGTTTCTGCATGA 1320 0.4523 MKHISEMERPSTPHKYHQKNQSALNYIKAAAKKLAGVFSTLAFLTRPTKTASKGAPATPDGSRNYGQPPGISCSNNKRSSRFKYSDSYGSSNAASGQLVTENFSIEEINKATQNFSQANKIGEGGFGTVYKGRLGNGSLVAIKRAKKNMYDKRLSQEFKNEILTLSRIEHLNLVKLLGYLEHKDERIIIIEYIGNGTLREHLDGTQGLEIAERLDIAIDVAHAVAYLHMYTDTPIIHRDIKASNILITEKLRAKVADFGFARLAAEDPGATHISTQIKGTAGYLDPEYLRTYQLTEKSDVYSFGVLLVEMVTGRHPIESKRPLSERVTTRWAMERLKEGDAVLAMDPKLRRNPASNQAVERVLKLARQCLAPLRQSRPSMRKCAEVLWGIRKDFREKAFSYSPCPSSHRSDNFLNKDARKNRHHAFGLEDCDNYKFVSA* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0623 439 MobiDBLite consensus disorder prediction 1 15 - -
Vvi6g0623 439 MobiDBLite consensus disorder prediction 1 20 - -
Vvi6g0623 439 SUPERFAMILY Protein kinase-like (PK-like) 92 390 IPR011009 -
Vvi6g0623 439 ProSiteProfiles Protein kinase domain profile. 115 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0623 439 PANTHER OS01G0750732 PROTEIN 41 397 - -
Vvi6g0623 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vvi6g0623 439 SMART serkin_6 115 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0623 439 Gene3D Phosphorylase Kinase; domain 1 75 192 - -
Vvi6g0623 439 ProSitePatterns Protein kinases ATP-binding region signature. 121 147 IPR017441 GO:0005524
Vvi6g0623 439 CDD STKc_IRAK 121 387 - -
Vvi6g0623 439 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 193 400 - -
Vvi6g0623 439 Pfam Protein kinase domain 116 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0623 439 MobiDBLite consensus disorder prediction 49 78 - -
Vvi6g0623 439 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 74 192 - -
Vvi6g0623 439 Gene3D Transferase(Phosphotransferase) domain 1 193 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0623 Vvi-Chr6 6832528 6834958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0623 94 439 Trihelix Transcription Factor Family AT1G70460 39.377 4.24e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vvi6g0623 Pkinase 4.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0623 - - vvi:100256996 877.47