Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0621 ATGTCATACTCCAAAAGATCAAGGTATTCTCGCTCACCTTCCCCATATAGAAGATATGGTAGGTCAATGTCAAGGTCTTTGTCAAGTCCAAGGTCAAGGAGCAGGAGTCGTGAATCAAGTGAGGTTGAGAATCCAGGAAACAACTTGTATGTTACAGGATTGTCAACTCGGGTCACCAAGCGGGAACTTGAGAAGCATTTCGCAAGTGAGGGATCGGTGGCGGATGTTCACCTTGTGACTGATCCATGGACAAGGGAATCACGAGGATTTGGTTTTGTGACAATGTCAACTGTTGAGGAGGCCAATCGCTGCATTAAGTACTTGGACCGCTCTGTACTTGAAGGCCGTGTGATCACAGTGGAGAAGGCCAGGAGGAGGAGAGGGCGAACACCTACTCCAGGGAAGTATCTTGGTCTGAGAACAGTCCGCGTGCGGCGTCGGTCCCCGAGCTATTCTCCTTATCATAGGAGCCGTTCCTCCAGATATTCATCTGAACGAGACAGGAGCCGGAGCAGATCATACTCCCCTTACTATGGCCGTGGGCGGAGGTCATACTCACGATCTCACTCACCATACAGCAGATCACCTGTTGGCAGGCGGAACGGCTCCTACTCTCCTTATGACAACAGGTATTACTCACCAGATGTTGGCTATTATAGAAGGCGGCATTACCGATCCATCTCCCGCAGCCTTTCCCCACGTGAAAGGAGGCGGTTAAGGAGTTATTCCCCACGTGAAAGGAGGCGCTTAAGGAGTTATTCCCCAAGTGTCTCCCCCAGGCCAAGGAGGAGTTCAAGGAGGAGTTCCTCTCGCAGCATTTCGCCAAGGCCAAGGAGAACGTCTAGGAGGAGCTATTCTCGCAGCATTTCACCTCGACCTAGGAGATTGAAAAGGAGCCCATACCGAGAAGCTTACTCAGGCAGCAGCGGAAGCGCCAGTTCCAGATCGGTATCAAGGTCTCTCACTCCTGGGTCAGCTTCACCATGA 987 0.5167 MSYSKRSRYSRSPSPYRRYGRSMSRSLSSPRSRSRSRESSEVENPGNNLYVTGLSTRVTKRELEKHFASEGSVADVHLVTDPWTRESRGFGFVTMSTVEEANRCIKYLDRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTVRVRRRSPSYSPYHRSRSSRYSSERDRSRSRSYSPYYGRGRRSYSRSHSPYSRSPVGRRNGSYSPYDNRYYSPDVGYYRRRHYRSISRSLSPRERRRLRSYSPRERRRLRSYSPSVSPRPRRSSRRSSSRSISPRPRRTSRRSYSRSISPRPRRLKRSPYREAYSGSSGSASSRSVSRSLTPGSASP* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0621 328 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 305 - -
Vvi6g0621 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Vvi6g0621 328 MobiDBLite consensus disorder prediction 304 328 - -
Vvi6g0621 328 MobiDBLite consensus disorder prediction 186 208 - -
Vvi6g0621 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Vvi6g0621 328 SUPERFAMILY RNA-binding domain, RBD 22 136 IPR035979 GO:0003676
Vvi6g0621 328 FunFam Serine/arginine-rich splicing factor SR45a 2 131 - -
Vvi6g0621 328 MobiDBLite consensus disorder prediction 229 253 - -
Vvi6g0621 328 MobiDBLite consensus disorder prediction 264 295 - -
Vvi6g0621 328 MobiDBLite consensus disorder prediction 124 214 - -
Vvi6g0621 328 Gene3D - 2 131 IPR012677 -
Vvi6g0621 328 MobiDBLite consensus disorder prediction 1 48 - -
Vvi6g0621 328 MobiDBLite consensus disorder prediction 159 173 - -
Vvi6g0621 328 SMART rrm1_1 48 121 IPR000504 GO:0003723
Vvi6g0621 328 MobiDBLite consensus disorder prediction 229 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0621 Vvi-Chr6 6811194 6813338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0621 48 129 Eukaryotic Initiation Factors Gene Family AT2G36660 35.366 9.28e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0621 - - vri:117916196 304.679