LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi6g0620	ATGGCTCATAGGCTGCTGAGAGATCTCGAAGCAGATGGATGGGAGCGCTCAGACTTCCCAATCATATGCGAATCGTGCCTCGGCGACAACCCATACGTTCGAATGACAAAGGCGGATTATGATAAGGAGTGTAAAATTTGTACACGACCCTTCACAGTTTTTAGGTGGAGGCCAGGCCGTGATGCAAGATTTAAAAAAACTGAGGTTTGCCAGACATGCAGTAAGTTAAAAAATGTTTGTCAAGTTTGTCTTCTCGATCTCGAATATGGCTTGCCAGTTCAGGTTCGAGACACTGCTCTTTCAATCAATTCCAATGATGCCATTCCAAAGAGTGATGTGAATAGGGAATACTTCGCAGAAGAGCATGACCGTAGAGCAAGAGCTGGTATAGATTATGAATCTTCATTTGGAAAAGTACGCCCAAATGATACTATTTTGAAGCTCCAGAGAACGACACCATATTACAAGAGGAACCGAGCACATGTTTGCAGTTTCTATGTTCGGGGTGAATGCACAAGAGGTGCTGAGTGCCCCTATAGACATGAGATGCCCATTACTGGGGAGTTATCACAGCAGAATATAAAAGACCGTTACTATGGAGTGAATGATCCAGTGGCATTAAAGCTACTTAACAAGGCTGGTGAAATGCCCTCATTGGAACCTCCTGAGGATGAGAGTATTAAAACTCTCTATGTGGGTGGACTTGATGCTAGAGTCACCGAGCAGGACCTAAGGGACCACTTTTATGCCCATGGTGAAATAGAATCAGTAAGAATGGTGCTCCAACGAGCATGTGCCTTCGTAACGTACACAACCAGGGAAGGTGCTGAGAAGGCAGCAGAAGAGCTTTCAAACAAACTGGTCATAAAAGGGTTGAGGCTGAAATTAATGTGGGGTAGACCACAGGCACCAAAACCTGAAGGAGAAAGCTCTGAAGAAGCAAGGCAGCAGGCAGCACTGGCTCATGGCGGGATGTTGCCAAGGGCTGTTATCTCCCAGCAGCAGAACCAGGTAATTCAACCCCCAGGCACTCAGGACCAACCTCCACCACCCATGCACTACTTCAACATTCCGCCTCCACCACAGCAGGAGAGGACCTTCTATCCATCGATGGATCCTCAAAGAATGGGTGCTCTTGTTCCCTCCCAGGAGGGGGCTCCTAGTGGGTCTGCAGGGCCAAGCGAGAACAAAGCTGGTTCAGACAAGCAGCAACAGGGGCAGCATTATGCTTACCCGGCCATGCCTCCACCACAAGGTCAATTTCACCAGCAGTTTTATCCACCATACGGCTATATGCCACCCCCTCCACCTTACCAGCAGTACCCTCCGCCATACCCCTCTGCAATGCCACCACCACCTCCTCCGCCACCACAGGCATCCCAACAGTTTCAACATTCTGCTCCACCAGGGCCATCCCAGCAGTGA	1425	0.4905	MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRRARAGIDYESSFGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQAPKPEGESSEEARQQAALAHGGMLPRAVISQQQNQVIQPPGTQDQPPPPMHYFNIPPPPQQERTFYPSMDPQRMGALVPSQEGAPSGSAGPSENKAGSDKQQQGQHYAYPAMPPPQGQFHQQFYPPYGYMPPPPPYQQYPPPYPSAMPPPPPPPPQASQQFQHSAPPGPSQQ*	475

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi6g0620	474	Gene3D	-	149	215	-	-
	Vvi6g0620	474	MobiDBLite	consensus disorder prediction	428	462	-	-
	Vvi6g0620	474	MobiDBLite	consensus disorder prediction	300	322	-	-
	Vvi6g0620	474	FunFam	Zinc finger CCCH domain-containing protein 4	149	208	-	-
	Vvi6g0620	474	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	228	301	IPR000504	GO:0003723
	Vvi6g0620	474	MobiDBLite	consensus disorder prediction	335	474	-	-
	Vvi6g0620	474	SMART	rrm1_1	229	297	IPR000504	GO:0003723
	Vvi6g0620	474	FunFam	Zinc finger CCCH domain-containing protein 40	213	309	-	-
	Vvi6g0620	474	MobiDBLite	consensus disorder prediction	343	366	-	-
	Vvi6g0620	474	SUPERFAMILY	RNA-binding domain, RBD	220	307	IPR035979	GO:0003676
	Vvi6g0620	474	MobiDBLite	consensus disorder prediction	387	407	-	-
	Vvi6g0620	474	SUPERFAMILY	CCCH zinc finger	159	182	IPR036855	GO:0046872
	Vvi6g0620	474	Pfam	Torus domain	155	194	IPR032297	-
	Vvi6g0620	474	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	230	288	IPR000504	GO:0003723
	Vvi6g0620	474	Gene3D	-	216	326	IPR012677	-
	Vvi6g0620	474	ProSiteProfiles	Zinc finger C3H1-type profile.	157	184	IPR000571	GO:0046872
	Vvi6g0620	474	CDD	RRM_RBM22	227	300	-	-
	Vvi6g0620	474	PANTHER	PRE-MRNA-SPLICING FACTOR RBM22	1	391	IPR039171	GO:0003723
	Vvi6g0620	474	SMART	c3hfinal6	157	183	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi6g0620	Vvi-Chr6	6800094	6806727	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi6g0620	218	289	Eukaryotic Initiation Factors Gene Family	AT1G49760	34.615	2.28e-06	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi6g0620	K12872		-	vvi:100241603	885.56