Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0606 ATGCTGACTGTGGAGAGCTCCTGTGTGGATGTGGAGTCCAATGGCCGTCGCCGTAGTGGCTCCGGCAGCACTGATGGGAGTCTGGGCTTCTCGGACTCTGATGGGAAGGCGTGGCTCTCGCCGTCCGATGAATGTCGGTTTTCCGGTGGGATCGAGGGGGGTTTGGGGTCCTCGTCGTCGGATTGTGGGTCGGAGGTGGATTTGGAGAGTGGGGTTTTGGCGGTGGAAAGGGATTGTAGAATTTGTCAGCTGAGCTTGGATGCCGGTGATCAAGAGACTGGATTGGCTATTGAGCTGGGTTGCTCTTGTAAGGGTGATCTTGGTTCTGCTCACAGGCAATGTGCTGAGACCTGGTTCAAAATTAAGGGAAATACAACCTGCGAGATTTGTCATGCTACAGCGGTCAATGTTGCTGGGGAGCAGATTAATGAGGCAGAAAATACTATTGCAGCAAGCACAGCAGAACCAGTAGCACCTGCAATTCCTGCAGAGCCACAACGCACCTGGCATGGACGGCGTGTCATGAATGTTCTGCTTGCCTGCATGATTGTTGTCTTTGTCATTTCTTGGCTCTTTCACTTCAATGTAATATCATGA 597 0.5209 MLTVESSCVDVESNGRRRSGSGSTDGSLGFSDSDGKAWLSPSDECRFSGGIEGGLGSSSSDCGSEVDLESGVLAVERDCRICQLSLDAGDQETGLAIELGCSCKGDLGSAHRQCAETWFKIKGNTTCEICHATAVNVAGEQINEAENTIAASTAEPVAPAIPAEPQRTWHGRRVMNVLLACMIVVFVISWLFHFNVIS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0606 198 Coils Coil 135 155 - -
Vvi6g0606 198 MobiDBLite consensus disorder prediction 1 33 - -
Vvi6g0606 198 Pfam RING-variant domain 79 130 IPR011016 GO:0008270
Vvi6g0606 198 SUPERFAMILY RING/U-box 76 133 - -
Vvi6g0606 198 ProSiteProfiles Zinc finger RING-CH-type profile. 71 137 IPR011016 GO:0008270
Vvi6g0606 198 PANTHER ZINC FINGER, RING-CH-TYPE 13 197 - -
Vvi6g0606 198 SMART ringv_2 78 131 IPR011016 GO:0008270
Vvi6g0606 198 MobiDBLite consensus disorder prediction 1 30 - -
Vvi6g0606 198 CDD RING_CH-C4HC3_MARCH 79 131 - -
Vvi6g0606 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 140 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0606 Vvi-Chr6 6575540 6578885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0606 57 198 C3H Transcription Factor Family AT5G05830 51.282 1.04e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0606 - - vvi:100250194 365.925