Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0602 ATGGGAGCTCGCTGCTCCAAATTCTCGCTCTGCTGGTGGCCGCATCTCAAATCAAACAGCCAGGATTCGTTCGATCTCGAGAACGGAGGCAAAAATGAAGGGGACTCATTGCCTAGTTTCGGAGAGTTTAGCTTGGACCAACTGAGAGCTGCGACGTCGGGATTTTCTTCTGATAATATCGTGTCAGAGCATGGTGAGAAAGCTCCCAATGTTGTTTACAAAGGAAAGCTCGAAGATGACCGTTGGATCGCTGTTAAACGTTTCAATAAGTCCGCTTGGCCCGATTCTCGGCAATTCCTGGAAGAAGCAAGAGCAGTGGGGCAGCTTCGAAATGAGCGATTGGCAAATTTGATTGGATGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCGGAGTTCATGCCTAATGAAACTCTCTCAAAGCACCTTTTCCATTGGGAGGCACAGCCCATGAAATGGGCAATGAGGCTGAGAGTGGCTCTTTATTTGGCACAAGCTTTGGAATACTGCAGTAGTAAAGGGCGGGCATTGTACCATGACCTGAATGCTTACAGAGTTTTGTTTGATCAGGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGAGAACAGGTAGAGTGACTGCTGAAAGTGTAGTTTACAGCTTTGGCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCATGCACTTGACCTGATACGTGGCAAGAATTTTCTGATGTTAATGGACTCATGTTTGGAGGGCCATTTCTCAAATGATGATGGAACTGAATTAGTGCGGTTAGCTTCACGTTGCTTACAGTATGAGCCCCGTGAGAGGCCAAATGCTAGATCTCTTGTGACTTCTCTGACTCCTCTTCAAAAAGAAACTGAGGTACCATCATACGTTCTGATGGGTATTCAACAAGAAACTGTATCCCCAGCAGAAACGCTACCTTTGACGCCTCTAGGTGAAGCGTGCTCAAGAATGGATCTGACTGCAATTCATGAAATATTGGAGAAGGTTGGATACAAGGATGATGAAGGGGTGGCGAATGAGCTGTCTTTCCAAATGTGGACAAATCAAATACAGGAGACCCTGAATTCTAAGAAGCGTGGAGACACTGCATTTCGAGCTAAAGACTTCACCACTGCAATTGAGTGTTACACACAATTCATTGATGGTGGGACCATGGTGTCACCAACTGTGTTTGCAAGACGTTGCTTGTGTTACTTGATGAATGAGATGCCACAAGAAGCTCTAGGAGATGCAATGCAAGCACAAGTAGTCTCCCCTGATTGGTCAACTGCCTTCTATCTTCAAGCTGCCGCACTCTTCAGCCTTGGTATGGACAATGATGCTCGGGAAACACTCAAAGATGGCACAACCTTAGAGGCCAAAAGAAATAGAAAATGA 1473 0.4603 MGARCSKFSLCWWPHLKSNSQDSFDLENGGKNEGDSLPSFGEFSLDQLRAATSGFSSDNIVSEHGEKAPNVVYKGKLEDDRWIAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLIGCCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNARSLVTSLTPLQKETEVPSYVLMGIQQETVSPAETLPLTPLGEACSRMDLTAIHEILEKVGYKDDEGVANELSFQMWTNQIQETLNSKKRGDTAFRAKDFTTAIECYTQFIDGGTMVSPTVFARRCLCYLMNEMPQEALGDAMQAQVVSPDWSTAFYLQAAALFSLGMDNDARETLKDGTTLEAKRNRK* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0602 490 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 17 489 IPR045845 GO:0004672|GO:0009742
Vvi6g0602 490 Gene3D Phosphorylase Kinase; domain 1 30 133 - -
Vvi6g0602 490 FunFam probable serine/threonine-protein kinase At4g35230 30 133 - -
Vvi6g0602 490 ProSiteProfiles Protein kinase domain profile. 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0602 490 Gene3D Transferase(Phosphotransferase) domain 1 135 327 - -
Vvi6g0602 490 FunFam probable serine/threonine-protein kinase At5g41260 135 326 - -
Vvi6g0602 490 FunFam probable serine/threonine-protein kinase At4g35230 383 490 - -
Vvi6g0602 490 Gene3D Tetratricopeptide repeat domain 383 490 IPR011990 GO:0005515
Vvi6g0602 490 SUPERFAMILY TPR-like 387 486 IPR011990 GO:0005515
Vvi6g0602 490 SUPERFAMILY Protein kinase-like (PK-like) 39 318 IPR011009 -
Vvi6g0602 490 Pfam Protein tyrosine and serine/threonine kinase 71 309 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0602 Vvi-Chr6 6553470 6561808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0602 43 321 Glycoside Hydrolase AT3G07070 33.762 3.49e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vvi6g0602 PK_Tyr_Ser-Thr 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0602 - - vvi:100256923 998.808