LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi6g0581	ATGTTAATAATAGTGCAGGTTTACATAGTGTATTTAGGATCCCTTCCTAAAGGGGAATTTTCACCTATGTCTGAACACCTTGGGGTTCTCGAAGATGTTCTTGAGGGCAGTTCTTCAACAGATTCTTTGGTAAGAAGTTATAAGAGAAGTTTCAATGGATTTGCAGCAAGGCTCACTGAAAAGGAACGAGAAAAATTGGCTAATAAGGAAGGCGTGGTGTCGGTTTTTCCGAGTAGAATTTTAAAACTTCATACAACAAGATCTTGGGACTTCATGGGATTCTCCGAAACATCTAGGCACAAACCTGCTCTTGAGAGTGATGTTATAATTGGAGTCTTTGACACTGGAATTTGGCCTGAATCACCTAGCTTTAGTGATAAAGATTTTGGTCCACCTCCAAGAAAATGGAAAGGTGTTTGTTCAGGTGGCAAAAATTTTACTTGCAACAAGAAGGTTATTGGAGCTCGAATCTACAATTCGCTGAATGATAGTTTCGATGTTTCAGTGAGGGACATAGATGGTCATGGATCCCACACTGCCTCAATAGCTGCTGGCAACAATGTAGAGCATGCGAGTTTTCATGGCTTAGCACAAGGAAAGGCAAGAGGAGGGGTTCCCTCTGCAAGGCTTGCCATATACAAAGTCTGTGTTTTTCTAGGGTGCGCAAGCGCGGACATTTTGGCTGCCTTTGATGATGCTATTGCAGATGGGGTTGACATCATTTCAATATCTCTTGGATTTGATTCTGCAGTTGCTTTGGAAGAGGATGCCATAGCAATTGGTGCTTTTCATGCCATGGCCGGAGGTATATTAACTGTGCACTCTGCAGGAAATGAAGGTCCTGAGGTATTTTCTACATTTAGCTCTGCACCATGGATGGTCAGTGTAGCAGCAAGCACGATTGATCGCAAAATTATTGACAGGGTGGTTCTTGGCAATGGAACAGAACTAACAGGTCGTTCATTTAATTATTTCACGATGAATGGATCCATGTACCCTCTTATATACGGAAAAGTTACTAGCCGTGCCAATGCCTGTAATAATTTCCTATCACAGTTGTGCGTGCCAGATTGTTTAAATAAGAGTGCAGTGGAAGGAAAAATTCTACTATGTGAAAGCGCTTATGGAGATGAGGGCGCTCATTGGGCTGGTGCCGCCGGCTCAATCAAATTGGATGTAGGTGTTTCTTCTGTTGTCCCCTTACCTACAATAGCTTTACGTGGTAAAGACTTGCGCCTCGTCCGATCCTATTATAATTCCACAAAAAAGGCTGAAGCAAAGATACTGAAGAGTGAGGCAATCAAAGATTCTTCTGCTCCTGTAGTGGCTCCCTTTTCATCACGAGGGCCAAACGCAGCCATACTTGAGATTATGAAGCCAGATATTACAGCCCCTGGAGTAGATATATTGGCAGCATTCTCCCCTATTCCTAAACTTGTAGACGGCATATCTGTGGAATATAATATATTATCAGGAACCTCCATGGCTTGCCCCCATGTTGCTGGAATTGCTGCTTATGTTAAAAGTTTCCACCCCGCCTGGTCTGCTTCAGCCATCCGATCTGCTCTTATGACTACTGCTCGGCCCATGAAAGTTTCTGCAAATCTACATGGTGTACTCAGTTTTGGGTCTGGGCATGTCGATCCAGTTAAAGCTATAAGTCCTGGATTAGTGTATGAAACCACTAAGGACAACTACACACAGATGTTGTGCGACATGGGTTACAACACAACAATGGTGAGACTCATTTCAGGAGACAACAGCAGTTGTCCAAAGGACAGCAAAGGTTCCCCAAAAGATCTCAACTATCCTTCAATGACAGTTTACGTTAAGCAGTTAAGGCCTTTTAAAGTAGAGTTTCCAAGAACAGTTACAAATGTTGGCCGCTCCAACTCTACTTATAAAGCACAAGTCATTATCAGAAAACATCCACGTATGAAGGTCGACGTGAATCCTCCCATGCTCTCTTTCAAGTTAATAAAGGAGAAGAAATCTTTTGTGGTGACTGTTACTGGTCAAGGAATGACGATGGAGAGACCGGTGGAGTCGGCGACACTGGTGTGGTCTGATGGCACTCATACTGTGAGGAGTCCCATTACGGTCTACACTGACATGTTGATTGATTAA	2127	0.4325	MLIIVQVYIVYLGSLPKGEFSPMSEHLGVLEDVLEGSSSTDSLVRSYKRSFNGFAARLTEKEREKLANKEGVVSVFPSRILKLHTTRSWDFMGFSETSRHKPALESDVIIGVFDTGIWPESPSFSDKDFGPPPRKWKGVCSGGKNFTCNKKVIGARIYNSLNDSFDVSVRDIDGHGSHTASIAAGNNVEHASFHGLAQGKARGGVPSARLAIYKVCVFLGCASADILAAFDDAIADGVDIISISLGFDSAVALEEDAIAIGAFHAMAGGILTVHSAGNEGPEVFSTFSSAPWMVSVAASTIDRKIIDRVVLGNGTELTGRSFNYFTMNGSMYPLIYGKVTSRANACNNFLSQLCVPDCLNKSAVEGKILLCESAYGDEGAHWAGAAGSIKLDVGVSSVVPLPTIALRGKDLRLVRSYYNSTKKAEAKILKSEAIKDSSAPVVAPFSSRGPNAAILEIMKPDITAPGVDILAAFSPIPKLVDGISVEYNILSGTSMACPHVAGIAAYVKSFHPAWSASAIRSALMTTARPMKVSANLHGVLSFGSGHVDPVKAISPGLVYETTKDNYTQMLCDMGYNTTMVRLISGDNSSCPKDSKGSPKDLNYPSMTVYVKQLRPFKVEFPRTVTNVGRSNSTYKAQVIIRKHPRMKVDVNPPMLSFKLIKEKKSFVVTVTGQGMTMERPVESATLVWSDGTHTVRSPITVYTDMLID*	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi6g0581	708	ProSiteProfiles	Serine proteases, subtilase domain profile.	88	553	-	-
	Vvi6g0581	708	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	5	84	IPR037045	-
	Vvi6g0581	708	Gene3D	-	570	704	-	-
	Vvi6g0581	708	Gene3D	-	302	435	-	-
	Vvi6g0581	708	Pfam	Subtilase family	106	528	IPR000209	GO:0006508\|GO:0008236
	Vvi6g0581	708	Pfam	Fibronectin type-III domain	600	701	IPR041469	-
	Vvi6g0581	708	CDD	PA_subtilisin_like	309	428	-	-
	Vvi6g0581	708	CDD	Peptidases_S8_3	81	527	IPR034197	-
	Vvi6g0581	708	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	8	701	IPR045051	-
	Vvi6g0581	708	Pfam	Peptidase inhibitor I9	7	84	IPR010259	-
	Vvi6g0581	708	Gene3D	Peptidase S8/S53 domain	107	566	IPR036852	GO:0004252\|GO:0006508
	Vvi6g0581	708	PRINTS	Subtilisin serine protease family (S8) signature	171	184	IPR015500	-
	Vvi6g0581	708	PRINTS	Subtilisin serine protease family (S8) signature	491	507	IPR015500	-
	Vvi6g0581	708	PRINTS	Subtilisin serine protease family (S8) signature	105	124	IPR015500	-
	Vvi6g0581	708	ProSitePatterns	Serine proteases, subtilase family, serine active site.	492	502	IPR023828	-
	Vvi6g0581	708	SUPERFAMILY	Subtilisin-like	83	557	IPR036852	GO:0004252\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi6g0581	Vvi-Chr6	6420422	6423513	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi6g0581	6	702	Subtilisin-like Serine Gene Family	AT3G46850	56.197	0.0	756

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi6g0581	-		-	vvi:100243364	1389.4