Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0580 ATGTCTTGCCCCCATGTTGCTGGGATTGCCGCTTATGTTAAAAGTTTCCATCCAGACTGGTCTCCTTCAGCTATCCAATCTGCTCTTATGATAACTGCCTGGCCACTGAATCCTACCACAAATCCAGATGGTGTACTTGCTTATGGATCGGGGCATGTTGATCCAATAAAAGCTACAGATCCTGGTTTAGTGTATGAAGCCCTTAAAGATGACTACATAACTATGCTGTGCAGTATGGGCTATGGTGAACATAAGTTGAGGCTCATTTCAAGAGACAACAGCACTTGTCCTAAGAATATGCAGGTTTACATAGTGTATTTAGGATCCCTTCCTAAAGGGGAATTTTCACCTATGTCTCAACACATTAGGGTTCTTGAAGATGTTCTTGAGGGGAGAATTAGGCATATCTACTCCTTCTAA 420 0.4238 MSCPHVAGIAAYVKSFHPDWSPSAIQSALMITAWPLNPTTNPDGVLAYGSGHVDPIKATDPGLVYEALKDDYITMLCSMGYGEHKLRLISRDNSTCPKNMQVYIVYLGSLPKGEFSPMSQHIRVLEDVLEGRIRHIYSF* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0580 139 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 100 IPR045051 -
Vvi6g0580 139 Gene3D Peptidase S8/S53 domain 1 72 IPR036852 GO:0004252|GO:0006508
Vvi6g0580 139 ProSiteProfiles Serine proteases, subtilase domain profile. 1 59 - -
Vvi6g0580 139 Pfam Subtilase family 1 40 IPR000209 GO:0006508|GO:0008236
Vvi6g0580 139 SUPERFAMILY Subtilisin-like 1 60 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0580 Vvi-Chr6 6415601 6417495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0580 1 98 Subtilisin-like Serine Gene Family AT3G46850 65.347 5.13e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0580 - - vvi:100260464 164.851