Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0574 ATGAAGTCTCCATCAGAACAGAGCATCAGCAAGAAATTGAGATGTCAAAAGCCTCTAAAGAAAATGTTCTTACTATGCCATCACAGTTATCTTGCTGTCACATCTGTGCCTTCTCTCAGCATGAGATTAGCAGTGGAGATTGTTGGGGGTATAAAATCGAACAGCCTTGCAGTTCTCACAGATGCAGCCCATTTGCTCAGTGATGTTTTTGGGTTCTCCATTTCTCTTTTTGCGGTTTGGGCTTCAGGTTGGCGAGCAACATCACAGCAATCTTTTGGGTTCAATCGTGTTGAAGTTTTGGGAGCCCTTTTTTCTGTGCAGCTCATATGGCTGATCGCCGGGATCTTAATCTATGAAGCAGTGAACAGAATCCTGCACCAGCATGCAAAGGTGAATGGGAAGCTCATGTTTGCAATTGCAGCATTCGGTTTTATAAGCAACTTGATCATGGTGACATGGCTTGGTCATGATCACACTCATCATGATTGTGGGCACAAAGATCATGATCATGACCATCATGACTATCATGACCATCATCATCATCATCATCATGAAAGTGACAAACCGTGCTCAATGGATGAGGAAGAGAGTACTAAACTGGTGTCGAGTTCCCCAGAAAAAACCAAAATATTAAACATAAATCTCCAAGGGGCTTACTTACATGTCATGGCTGATCTGATTCAATCTGTTGGGGTAATGGTCGCTGGTGGCATAATATGGGCAAAGCCAGAATGGTTGATGGTTGATCTGGTCTGCACTCTCTGCTTCTCTGTTCTCGTTCTAACAACCACCCTAACCATGCTTAGAAATATATTCAGTATACTAATGGAAAGGGCCCCGATTGAAATCGACATCGCTGGGCTTGAAAATGGTCTCAAGAGCATCAAGGGAGTTCAGGATGTTCATGACCTACATGTATGGGCAATAACGGTTGGGAAAGTTGTAATGTCTTGCCATGTAATAGCTGAACCAGGAGCCACCTCCAGCGAAATACTTGGTGATATTAGAGACTATTGTGAAAAAACATACAGAATTCTTCATGTAACCGTACAAGTTGAATAG 1062 0.4284 MKSPSEQSISKKLRCQKPLKKMFLLCHHSYLAVTSVPSLSMRLAVEIVGGIKSNSLAVLTDAAHLLSDVFGFSISLFAVWASGWRATSQQSFGFNRVEVLGALFSVQLIWLIAGILIYEAVNRILHQHAKVNGKLMFAIAAFGFISNLIMVTWLGHDHTHHDCGHKDHDHDHHDYHDHHHHHHHESDKPCSMDEEESTKLVSSSPEKTKILNINLQGAYLHVMADLIQSVGVMVAGGIIWAKPEWLMVDLVCTLCFSVLVLTTTLTMLRNIFSILMERAPIEIDIAGLENGLKSIKGVQDVHDLHVWAITVGKVVMSCHVIAEPGATSSEILGDIRDYCEKTYRILHVTVQVE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0574 353 MobiDBLite consensus disorder prediction 165 203 - -
Vvi6g0574 353 Pfam Cation efflux family 43 276 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vvi6g0574 353 NCBIfam cation diffusion facilitator family transporter 43 353 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vvi6g0574 353 SUPERFAMILY Cation efflux protein transmembrane domain-like 41 277 IPR027469 -
Vvi6g0574 353 Gene3D Cation efflux protein transmembrane domain 38 275 IPR027469 -
Vvi6g0574 353 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 43 353 - -
Vvi6g0574 353 MobiDBLite consensus disorder prediction 165 202 - -
Vvi6g0574 353 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 284 353 IPR036837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0574 Vvi-Chr6 6374836 6375974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0574 43 353 Inorganic Solute Cotransporters AT2G29410 55.627 4.86e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0574 K14689 - vvi:100255391 532.717