Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0573 ATGGCGCAAATGGAGAGTGGTGTTTTGGATGATATAATTGACAGGCTTATGGAGTTTCGGCAGGGGAAGTCGGGGAAGCAGGTTCCGCTGATGGAGTCGGAGATCCGCCAGCTCTGTACTGTTTCCAGAGAGATCTTTCTTCAGCAGCCTAATCTTCTTGAGCTGGAGGCACCAATTAAGATCTGCGGTGATATTCATGGGCAATACAGTGATCTTTTAAGGCTCTTTGACTATGGGGGATATCCTCCTGAAGCCAATTATTTATTTCTAGGGGACTATGTGGACCGTGGAAAACAGAGTTTGGAAACAATATGCCTTCTGCTTGCTTATAAAATTAAATACCCAGAGAACTTCTTTCTCTTAAGAGGAAATCATGAGTGTGCTTCTATTAACAGGATTTATGGATTCTATGATGAATGTAAACGTCGGTTCAATGTTAGACTTTGGAAGACGTTCACAGATTGTTTTAATTGTCTCCCTGTGGCTGCTCTGATAGATGACAAGATATTGTGCATGCATGGTGGTCTTTCCCCTGAGCTAACAAATTTGGATCAAATTAGAAAATTGTCCCGTCCAACTGATGTTCCAGACTCTGGTTTGCTTTGTGATTTACTTTGGTCGGATCCTGGTAGAGATATCAAGGGTTGGGGAATGAATGACAGGGGAGTCTCTTTCACTTTCGGTCCAGATAAAGTTTCAGAATTCTTAAGCAAGCATGATATGGACCTTATTTGTCGTGCCCACCAGGTTGTGGAAGATGGATATGAATTCTTTGCAGACAGACAGCTTGTTACAATATTTTCTGCTCCCAACTATTGTGGTGAATTTGATAATGCTGGTGCAATGATGAGTGTTGATGAAAGCTTAATGTGCTCTTTTCAAATTCTTAAGCCAAAGTTTATGTGA 906 0.415 MAQMESGVLDDIIDRLMEFRQGKSGKQVPLMESEIRQLCTVSREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFDYGGYPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDDKILCMHGGLSPELTNLDQIRKLSRPTDVPDSGLLCDLLWSDPGRDIKGWGMNDRGVSFTFGPDKVSEFLSKHDMDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPKFM* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0573 301 PRINTS Serine/threonine phosphatase family signature 154 180 IPR006186 GO:0016787
Vvi6g0573 301 PRINTS Serine/threonine phosphatase family signature 240 260 IPR006186 GO:0016787
Vvi6g0573 301 PRINTS Serine/threonine phosphatase family signature 120 144 IPR006186 GO:0016787
Vvi6g0573 301 PRINTS Serine/threonine phosphatase family signature 183 210 IPR006186 GO:0016787
Vvi6g0573 301 PRINTS Serine/threonine phosphatase family signature 87 114 IPR006186 GO:0016787
Vvi6g0573 301 PRINTS Serine/threonine phosphatase family signature 262 278 IPR006186 GO:0016787
Vvi6g0573 301 PRINTS Serine/threonine phosphatase family signature 58 85 IPR006186 GO:0016787
Vvi6g0573 301 Gene3D - 2 301 IPR029052 -
Vvi6g0573 301 SMART pp2a_7 30 300 IPR006186 GO:0016787
Vvi6g0573 301 CDD MPP_PP1_PPKL 8 298 - -
Vvi6g0573 301 Pfam Serine-threonine protein phosphatase N-terminal domain 9 56 IPR031675 -
Vvi6g0573 301 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 12 298 - -
Vvi6g0573 301 SUPERFAMILY Metallo-dependent phosphatases 24 299 IPR029052 -
Vvi6g0573 301 FunFam Serine/threonine-protein phosphatase 56 300 - -
Vvi6g0573 301 Pfam Calcineurin-like phosphoesterase 58 250 IPR004843 GO:0016787
Vvi6g0573 301 ProSitePatterns Serine/threonine specific protein phosphatases signature. 121 126 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0573 Vvi-Chr6 6364020 6368120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0573 59 246 Calmodulin-binding Proteins AT5G63870 31.839 1.18e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0573 K06269 - vvi:100250219 627.476