Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0568 ATGGCAATAGACAACAAACCAGGTTGGGGTTCCACCCAATCCAAACTCCGGTGGGGCGAGCTCGAAGAAGACGATGGGGAGGATCTCGATTTCCTCCTGCCTCCTCGTCAGGTAATCGGACCCGACGACAACGGCATCAAGAAGGTGATCGAGTACAAGTTCAACGACGATGGCAACAAGGTCAAGATCACCACCACCACTCGCATTCGCAAACTCGCCAAGGCCAGGCTCAGTAAGCGAGCCATCGAGCGCCGATCCTGGGCCAAGTTTGGCGATGCCGTGCACGAGGATGTTGGCAGTCGTCTCACCATGGTCTCCACCGAAGAAATCCTTCTCGAACGTCCTAGGGCTCCGGGTTCCAAAGCGGAAGAATCAAAGGTTGCAGGAGACTCCTTGGCTCAACTTGGGAAAGGAGGTGCTGTTCTCATGGTGTGCAGGACCTGTGGTAAGAAGGGTGACCATTGGACTTCAAGGTGCCCATACAAGGATCTTGCCCCACCTTCTGAAGGATTCATTGATAAGCCTGCTGCATCAGAAGGCACAGCCACTGCTTCTGGTCCTAGCAAGGGGACATATGTTCCCCCAGGCATGAGAGCAGGTGCAGAGAGAACTGGAACTGAAATGAGACGCAGGAATGAAGAGAACTCTGTTCGGGTCACCAACCTATCAGAGGACACCCGGGAGCCTGACTTGCATGAGCTCTTCAGGACATTTGGCCCTGTAAGTCGTGTGTATGTTGCTGTTGATCAGAAGACTGGCATGAGCAGAGGTTTTGGATTTGTTAACTTTGTGAACAAGGAAGATGCTGAGAGAGCTATCAACAAACTCAATGGATATGGTTATGACAATCTCATCCTACGAGTTGAATGGGCCACGCCAAGGTCAAACTAA 891 0.5208 MAIDNKPGWGSTQSKLRWGELEEDDGEDLDFLLPPRQVIGPDDNGIKKVIEYKFNDDGNKVKITTTTRIRKLAKARLSKRAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKAEESKVAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFIDKPAASEGTATASGPSKGTYVPPGMRAGAERTGTEMRRRNEENSVRVTNLSEDTREPDLHELFRTFGPVSRVYVAVDQKTGMSRGFGFVNFVNKEDAERAINKLNGYGYDNLILRVEWATPRSN* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0568 296 PIRSF Transl_init_eIF-3_RNA-bind 9 296 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vvi6g0568 296 Gene3D - 176 296 IPR012677 -
Vvi6g0568 296 Pfam Eukaryotic translation initiation factor 3 subunit G 37 164 IPR024675 -
Vvi6g0568 296 SUPERFAMILY RNA-binding domain, RBD 213 295 IPR035979 GO:0003676
Vvi6g0568 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Vvi6g0568 296 SMART rrm1_1 216 289 IPR000504 GO:0003723
Vvi6g0568 296 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 15 295 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vvi6g0568 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 283 IPR000504 GO:0003723
Vvi6g0568 296 CDD RRM_eIF3G_like 216 291 IPR034240 -
Vvi6g0568 296 CDD eIF3G 44 163 IPR024675 -
Vvi6g0568 296 MobiDBLite consensus disorder prediction 170 215 - -
Vvi6g0568 296 FunFam Eukaryotic translation initiation factor 3 subunit G 180 296 - -
Vvi6g0568 296 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 25 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0568 Vvi-Chr6 6333124 6335772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0568 1 294 Eukaryotic Initiation Factors Gene Family AT3G11400 67.077 7.29e-156 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0568 K03248 - vvi:100265545 590.882