Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0566 ATGGCGGAGATCTGCTGTGGGGTTGTGAGCGATGGGGAGACGTCCACTCAGTGCGAGCCGAGTTCGCGAGTGGCGAGGCGACGGAGAATGGAGCTCCGGCGTTTCAAGTTCGTTGCCGGTGTGGCCCCTTCAGAGACCGAGAACGGGCAGAAGCGGCGGAAGCTGGAGGCGGCTTATCCTTACGCCGAGGCCTGCTCGTGGAAGTGCGCCAACACCTTTGAAAACTGCGCTTCTGAAGTAGAGGGCAGTTGTTTGCAGTCGGAACATGGAGGCTCCGACAAGGAGCATCCTCAGACGAGTTTTCAGGCGGATCTCCAGATGGAGAATGAGTATACGAAGTTCGGCATAGCATCGGTATGTGGGAGGAGAAGAGACATGGAAGACGCCGTCGCCGTGCACCCTTCCTTCCTCCGGCAACACCACCAAACCACGAATGGCTCGCACTACTTCGGAGTTTATGATGGTCACGGCTGTTCGCATGTGGCGATGAACTGCAGAGATCGAATGCATGAACTGGTGAGAGAAGAGCTAGAGAACAAGGACACGTGTACGGAGTCAGGTTGGAAGAATGCGATGGAGCGAAGCTTCAGTCGCATGGACAAGGAAGTGAATGCACGGAATATAGGAGCATCAGGAGCCGTTTGCAGGTGCGAGCTTCAAACACCTGAGTGCGATGCCGTAGGATCCACAGCCGTAGTCGCAATAGTCACACCGGAGAAGATCGTCGTCGCCAACTGCGGCGACTCCCGCGCGGTTCTCTGCCGCAACGGCAAGGCGATCCCTCTCTCCTCCGATCACAAGGATTGGTGA 810 0.5691 MAEICCGVVSDGETSTQCEPSSRVARRRRMELRRFKFVAGVAPSETENGQKRRKLEAAYPYAEACSWKCANTFENCASEVEGSCLQSEHGGSDKEHPQTSFQADLQMENEYTKFGIASVCGRRRDMEDAVAVHPSFLRQHHQTTNGSHYFGVYDGHGCSHVAMNCRDRMHELVREELENKDTCTESGWKNAMERSFSRMDKEVNARNIGASGAVCRCELQTPECDAVGSTAVVAIVTPEKIVVANCGDSRAVLCRNGKAIPLSSDHKDW* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0566 269 PANTHER PROTEIN PHOSPHATASE 86 267 IPR015655 GO:0004722|GO:0006470
Vvi6g0566 269 ProSiteProfiles PPM-type phosphatase domain profile. 113 269 IPR001932 -
Vvi6g0566 269 SMART PP2C_4 107 268 IPR001932 -
Vvi6g0566 269 ProSitePatterns PPM-type phosphatase domain signature. 149 157 IPR000222 GO:0043169
Vvi6g0566 269 SUPERFAMILY PP2C-like 106 267 IPR036457 -
Vvi6g0566 269 CDD PP2Cc 113 267 IPR001932 -
Vvi6g0566 269 Gene3D - 108 268 IPR036457 -
Vvi6g0566 269 Pfam Protein phosphatase 2C 113 267 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0566 Vvi-Chr6 6319044 6320059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0566 35 267 PP2C-type Phosphatase Gene Family AT5G59220 54.008 5.65e-73 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0566 K14497 - vvi:100255251 543.117