LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi6g0566	ATGGCGGAGATCTGCTGTGGGGTTGTGAGCGATGGGGAGACGTCCACTCAGTGCGAGCCGAGTTCGCGAGTGGCGAGGCGACGGAGAATGGAGCTCCGGCGTTTCAAGTTCGTTGCCGGTGTGGCCCCTTCAGAGACCGAGAACGGGCAGAAGCGGCGGAAGCTGGAGGCGGCTTATCCTTACGCCGAGGCCTGCTCGTGGAAGTGCGCCAACACCTTTGAAAACTGCGCTTCTGAAGTAGAGGGCAGTTGTTTGCAGTCGGAACATGGAGGCTCCGACAAGGAGCATCCTCAGACGAGTTTTCAGGCGGATCTCCAGATGGAGAATGAGTATACGAAGTTCGGCATAGCATCGGTATGTGGGAGGAGAAGAGACATGGAAGACGCCGTCGCCGTGCACCCTTCCTTCCTCCGGCAACACCACCAAACCACGAATGGCTCGCACTACTTCGGAGTTTATGATGGTCACGGCTGTTCGCATGTGGCGATGAACTGCAGAGATCGAATGCATGAACTGGTGAGAGAAGAGCTAGAGAACAAGGACACGTGTACGGAGTCAGGTTGGAAGAATGCGATGGAGCGAAGCTTCAGTCGCATGGACAAGGAAGTGAATGCACGGAATATAGGAGCATCAGGAGCCGTTTGCAGGTGCGAGCTTCAAACACCTGAGTGCGATGCCGTAGGATCCACAGCCGTAGTCGCAATAGTCACACCGGAGAAGATCGTCGTCGCCAACTGCGGCGACTCCCGCGCGGTTCTCTGCCGCAACGGCAAGGCGATCCCTCTCTCCTCCGATCACAAGGATTGGTGA	810	0.5691	MAEICCGVVSDGETSTQCEPSSRVARRRRMELRRFKFVAGVAPSETENGQKRRKLEAAYPYAEACSWKCANTFENCASEVEGSCLQSEHGGSDKEHPQTSFQADLQMENEYTKFGIASVCGRRRDMEDAVAVHPSFLRQHHQTTNGSHYFGVYDGHGCSHVAMNCRDRMHELVREELENKDTCTESGWKNAMERSFSRMDKEVNARNIGASGAVCRCELQTPECDAVGSTAVVAIVTPEKIVVANCGDSRAVLCRNGKAIPLSSDHKDW*	270

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi6g0566	269	PANTHER	PROTEIN PHOSPHATASE	86	267	IPR015655	GO:0004722\|GO:0006470
	Vvi6g0566	269	ProSiteProfiles	PPM-type phosphatase domain profile.	113	269	IPR001932	-
	Vvi6g0566	269	SMART	PP2C_4	107	268	IPR001932	-
	Vvi6g0566	269	ProSitePatterns	PPM-type phosphatase domain signature.	149	157	IPR000222	GO:0043169
	Vvi6g0566	269	SUPERFAMILY	PP2C-like	106	267	IPR036457	-
	Vvi6g0566	269	CDD	PP2Cc	113	267	IPR001932	-
	Vvi6g0566	269	Gene3D	-	108	268	IPR036457	-
	Vvi6g0566	269	Pfam	Protein phosphatase 2C	113	267	IPR001932	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi6g0566	Vvi-Chr6	6319044	6320059	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi6g0566	35	267	PP2C-type Phosphatase Gene Family	AT5G59220	54.008	5.65e-73	224

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi6g0566	K14497		-	vvi:100255251	543.117

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