Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0549 ATGGAGCAAGCACGGTATTGGATGTGGAATAAAGGCAAAGGCCGTTGGAAATCTCATTTGGATGCATCATCCAATTCATGGGAAGAGGAAGCTTTTGCCAAGGATGCATCCCAGCCTTTTGGTGCTTTTATATGGCCTCCAAGATCTTATTCTTGCAGTTTCTGCAGAAGAGAATTCAGGACAGCTCAAGCCTTGGGGGGTCACATGAATGTCCACAGACGGGATAGAGCAAGGCTTAAGCTGCAGCCTCCTAGTCCCCATAAAGAGATATCCGGTAAATCGATGGGTGATGAAGATCCAGATCAAATTTGCACCTTGGTTTGCAATCCTAACCCTAATTCAATCCATGGAGTTGTTGCATCACCGCTCTCACCTTCAAGGGTTTCAGTGCTATCCATTCAAGAGAACTGTGAAGAGCTGTCCATGATTTCTTCCACTGTTCAAGAACATCATAAAGGTACCTTTTCCTGCTTCCCTCAATCTTGGTCTAATTCTGTTCCCATTAGGGTTTTCAGCATCCCTGATTCTAAGAGAAGAGAGGAAAACCCAATGAAGAAGCGAAAATCAAGAGTCCATGATGAGGCTAATTCCAGCAAATCTGACCTATCCATGAGCTTGAATTTGGTTATTGGTCCTGGCAATGAGCAGACTGTTAGCTGCAAGAGAAGAAGAACCGATCAAATACCGCTACCTTTCTTCCTTAAAGGAAGTTCAGCTACTAGGCATGATCTCAAATCGCAAATCACTGCACTTAACCTGGACAGTGCAGAGGGTTTAGACCTTGAGCTCCGGCTTGGTGACCCACCAAAGGTGAAGTAG 819 0.4505 MEQARYWMWNKGKGRWKSHLDASSNSWEEEAFAKDASQPFGAFIWPPRSYSCSFCRREFRTAQALGGHMNVHRRDRARLKLQPPSPHKEISGKSMGDEDPDQICTLVCNPNPNSIHGVVASPLSPSRVSVLSIQENCEELSMISSTVQEHHKGTFSCFPQSWSNSVPIRVFSIPDSKRREENPMKKRKSRVHDEANSSKSDLSMSLNLVIGPGNEQTVSCKRRRTDQIPLPFFLKGSSATRHDLKSQITALNLDSAEGLDLELRLGDPPKVK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0549 272 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Vvi6g0549 272 MobiDBLite consensus disorder prediction 175 197 - -
Vvi6g0549 272 Pfam C2H2-type zinc finger 50 74 - -
Vvi6g0549 272 MobiDBLite consensus disorder prediction 175 200 - -
Vvi6g0549 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Vvi6g0549 272 PANTHER OS07G0101800 PROTEIN 21 269 - -
Vvi6g0549 272 Gene3D Classic Zinc Finger 47 100 - -
Vvi6g0549 272 SUPERFAMILY beta-beta-alpha zinc fingers 47 76 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0549 Vvi-Chr6 6160463 6161281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0549 11 270 C2H2 Transcription Factor Family AT2G37740 33.657 3.11e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g0549 zf-C2H2_6 2.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0549 - - vvi:100255273 553.132