Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0548 ATGGAGACTGATCACCAAACCCTAGAAACTACTTCAGACCAGGTGGTCTGCACATCAGATGACCAAGGTCCAAGCCAAGCTAGGTCCTATGAGTGCACCTTTTGCAAGAGAGGTTTCTCCACTGCACAAGCACTAGGTGGCCATATGAATATCCACAGAAAAGACAAAGCCAAGCTCAAGAAAGCTTCCAATGAAGCTCAACAGTACTCTTTGGACATCACAAAGCCGGCATCCTTGTTTTCTCCAATTCCTACAAACGCAAAAGACCCATTGCAAGCTATGTACAGTGAAGAAAGAAGCAAAATTGCGTGGCCCAATTGGATAGTTTCTGGAGAAGATACCACTATCAGGGCTCAAACCCGTGTAGGGGAACCCCAGAAACTAACCTTTTTGGGGGAAACGCCATCAAATACTAGGGATCGTATGCTGACCAGTCAAGATATGATCAGTACTGTTAACGCTGGAAAGGGTTTGTCATCTGGCCAAGGATCATCAGGTGCTGAGTTAGATCTTGAGCTCAGACTGGGGCCTGAGCCACATGGACCATCAAAGGCAACGGGTACCAAAAAGTTCTTCTAA 579 0.4646 METDHQTLETTSDQVVCTSDDQGPSQARSYECTFCKRGFSTAQALGGHMNIHRKDKAKLKKASNEAQQYSLDITKPASLFSPIPTNAKDPLQAMYSEERSKIAWPNWIVSGEDTTIRAQTRVGEPQKLTFLGETPSNTRDRMLTSQDMISTVNAGKGLSSGQGSSGAELDLELRLGPEPHGPSKATGTKKFF* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0548 192 PANTHER OS07G0101800 PROTEIN 18 179 - -
Vvi6g0548 192 SUPERFAMILY beta-beta-alpha zinc fingers 27 57 IPR036236 -
Vvi6g0548 192 MobiDBLite consensus disorder prediction 154 192 - -
Vvi6g0548 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Vvi6g0548 192 Gene3D Classic Zinc Finger 6 79 - -
Vvi6g0548 192 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Vvi6g0548 192 MobiDBLite consensus disorder prediction 8 24 - -
Vvi6g0548 192 Pfam C2H2-type zinc finger 30 54 - -
Vvi6g0548 192 SMART c2h2final6 30 52 IPR013087 -
Vvi6g0548 192 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0548 Vvi-Chr6 6156545 6157123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0548 21 176 C2H2 Transcription Factor Family AT3G09290 33.758 6.94e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g0548 zf-C2H2_6 4.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0548 - - vvi:104879616 382.874