LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi6g0539	ATGGCTACAACAGTTACATCGCTTCACTTTTTGATCATTCTCTTCACATCTGTCAAACTCTTGGCCTTGGCAGAAGAAGAAGCCCAGTTCATCCACAATGGCTTCCAAGGAGCGAGTCTGCATCTTGGTGGAATCGCGAAGATCCACCCAAACGGTCTATTGCAGCTGACCAACACTTCAAAGCAACAAATTGGCCGCGCTTTCTTCCCACTTCCTCTGAAGTTCAACACATCTTCTGGTGATTCCAGGTCTCTCTCATTTTCTACCATTTTTGCATTTGCAATAGTTCCTGAATGGCAGGCTCTTGGTGGCCATGGTATTGTCTTCACCATTGCGCCATCCATGGACTTCCCTGGAGCTGTGGCAAGCCAATATTTGGGACTCTTCAATGTTACAAACAACGGTAATTCTTCCAATCATGTGTTTGCAGTTGAGCTAGATACAATTTTAAGCCCAGACTTGAAAGACACAGATGGAAATCATGTGGGAGTTGATGTGAATAGCCTTGACTCTGAAGTATCAGCTCCAGTGACCTATTTTTCCAACAAAGAAGGGAAGAATAAGAGCTTAGAGCTCATAAGCGGGAAGGCTATGCAGGTTTGGATAGATTATGATGATGTGCAGAAGCTAATCAATGTGACAGTAGCTCCCCTCAAAAGCCCAAAACCAAGCATGCCTCTATTGTCAACACCCATTAATCTTTCTTCTATTTTCTTGGAGTCTATGTATGTTGGTTTCTCTTCAGCCACTGGTGCAATGGCAAGTGATCACTATATTCTTGGGTGGAGCTTCAACAGAAGTGGGGAAGCACAAAGCCTTGAAATTTCAGAGCTTCCTTCCCTACCCCCAAGGAAGAAAGAAAGGAAGACACTAGTTGTAATTGTTTTGCTGTCACTGACAACATTAGTAATTGTTCTGGTTGTGCTCATGGGAGCCGGTTACATTATAAGAAAATTGAAATTTGAAGAACTACGGGAAGAGTGGGAAGGGGAATATGGTCCTCAAAGATTCTCCTATAAGGATCTCTACAAAGCAACCAAAGGTTTCAAAGACAAAGAGCTTCTTGGAGCAGGGGGTTTTGGGAAGGTTTATAGAGGAAGACTTCCTTCTTCAAACTTAGAAATTGCAGTCAAGAAAGTGTCTCATGATTCAAAGCAAGGGATGAGGGAATTTGTGGCTGAAATTGCAAGCATGGGAAGACTTAGGCATAGGAACTTAGTCCAGCTCCTTGGATATTGTCGGCGAAGAGGGGAACTGCTCTTGGTCTATGATCATATGCCTAATGGCAGCCTTGACAAGTTCCTATTTAGCGATGAAAATCCGATCCTTACTTGGCCTCAACGGTACCATATCCTCAGAGGAGTAGCATCTAGTCTTTTATATCTGCATGAAGAGTGGGAACAAGTTGTTCTCCATAGAGATGTGAAGGCTAGCAATGTTCTCCTAGACGCCAATCTGAATGGCCGGCTAGGAGACTTTGGGCTTGCTAAATTATATGATCATGATACCAACCCTCAAACTACTCATGTAGTTGGGACCGTGGGATATCTGGCACCAGAGCTTACTAGAACAGGGAAGGCAACTAGTAGCACTGATGTGTTTGCTTTTGGGGCTTTCATGCTTGAAACGGCTTGTGGCAGGAGGCCTGTGGAGCTACAAGGATATCCTGAAGGGGGGGTTCTGCTTGATTGGGTTCTTGAATGCTGGAAAAGAGGAGCTATTCTTCTGACTAGTGATCCTAGATTGGAAGGTCATTACGTTGCAGAGGAAATGGAATTGGTTTTGAAACTAGGCCTGCTTTGTTCAAGCCCTATACCCGCAGTTCGGCCTAGCATGAGGCAAGTGATGCAGTACTTGAATGGAGATGCTCCTTTGCCAGAGATACCACGTAACTTTTCCAGTATGGGAACATTTGGAGCAAATGGTGAAGAATCAGCTGAGGTTATCACGTCATTCCCTTCATCATCTGGGACGACTACTATCCGTTCATTCTCTAGCTCTGATTCAATCCTCAACCAAGGTCGATGA	2028	0.4443	MATTVTSLHFLIILFTSVKLLALAEEEAQFIHNGFQGASLHLGGIAKIHPNGLLQLTNTSKQQIGRAFFPLPLKFNTSSGDSRSLSFSTIFAFAIVPEWQALGGHGIVFTIAPSMDFPGAVASQYLGLFNVTNNGNSSNHVFAVELDTILSPDLKDTDGNHVGVDVNSLDSEVSAPVTYFSNKEGKNKSLELISGKAMQVWIDYDDVQKLINVTVAPLKSPKPSMPLLSTPINLSSIFLESMYVGFSSATGAMASDHYILGWSFNRSGEAQSLEISELPSLPPRKKERKTLVVIVLLSLTTLVIVLVVLMGAGYIIRKLKFEELREEWEGEYGPQRFSYKDLYKATKGFKDKELLGAGGFGKVYRGRLPSSNLEIAVKKVSHDSKQGMREFVAEIASMGRLRHRNLVQLLGYCRRRGELLLVYDHMPNGSLDKFLFSDENPILTWPQRYHILRGVASSLLYLHEEWEQVVLHRDVKASNVLLDANLNGRLGDFGLAKLYDHDTNPQTTHVVGTVGYLAPELTRTGKATSSTDVFAFGAFMLETACGRRPVELQGYPEGGVLLDWVLECWKRGAILLTSDPRLEGHYVAEEMELVLKLGLLCSSPIPAVRPSMRQVMQYLNGDAPLPEIPRNFSSMGTFGANGEESAEVITSFPSSSGTTTIRSFSSSDSILNQGR*	676

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi6g0539	675	FunFam	Putative receptor kinase Lecrk	426	630	-	-
	Vvi6g0539	675	Pfam	Legume lectin domain	28	279	IPR001220	GO:0030246
	Vvi6g0539	675	FunFam	L-type lectin-domain containing receptor kinase V.9	26	272	-	-
	Vvi6g0539	675	Gene3D	Phosphorylase Kinase; domain 1	334	425	-	-
	Vvi6g0539	675	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
	Vvi6g0539	675	MobiDBLite	consensus disorder prediction	652	675	-	-
	Vvi6g0539	675	ProSiteProfiles	Protein kinase domain profile.	349	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g0539	675	Pfam	Protein kinase domain	349	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g0539	675	CDD	lectin_legume_LecRK_Arcelin_ConA	29	268	IPR001220	GO:0030246
	Vvi6g0539	675	Gene3D	Transferase(Phosphotransferase) domain 1	426	624	-	-
	Vvi6g0539	675	Gene3D	-	26	278	-	-
	Vvi6g0539	675	SUPERFAMILY	Protein kinase-like (PK-like)	331	630	IPR011009	-
	Vvi6g0539	675	SUPERFAMILY	Concanavalin A-like lectins/glucanases	28	284	IPR013320	-
	Vvi6g0539	675	SMART	serkin_6	349	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi6g0539	675	PANTHER	-	24	635	-	-
	Vvi6g0539	675	FunFam	Lectin-domain containing receptor kinase A4.3	334	425	-	-
	Vvi6g0539	675	CDD	STKc_IRAK	355	621	-	-
	Vvi6g0539	675	ProSitePatterns	Protein kinases ATP-binding region signature.	355	379	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi6g0539	Vvi-Chr6	6103856	6105883	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi6g0539	18	675	Receptor kinase-like Gene Family	AT3G53810	53.433	0.0	698

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi6g0539		Pkinase	3.4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi6g0539	-		-	vvi:100246749	1307.74