Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0536 ATGAACATGCATGGAATCACTCTTCCCTTAGCCCTGCAGCTCCATTTTTCTCCTCCTCTTTTCTACCTACAAAATCTACCCAAATCTTCATTACCCATTTCCAGAATTGCCTCTGCACCCCATTTCAATCCTCTCTTTTTCACTCCAAATCGCAGAAACAATGGTAAGAATAAGAGGAGGAATAGTACTCTTTTGAAGGCGAGTCGCAGAGAGTCTCCGTATGAGGTGTTGGGGGTTTCTCCTTCTGCTAGTCCTGATCAGATCAAGAGGGCTTATCGGAAACTCGCTTTGAAGTATCATCCCGATGTCAATAAAGAGGCAAATGCACAGGAGAAATTTATGAGGATAAAGCATGCATACAATGCATTGATGAACTCTGAATCTCGGAGGAAATATGACTCTGGAAGTCGTGCATCCAACTATACCTATTCTAATGCCGAAAGAAACCAAAGCAGGGATACCCAAGAAGAAGAGTTCTATGGATTTGGTAATTTTGTGAGGGATGTTCAAATGACAGTAGAGGACTTCTTTAGGGATCTTCAAGAAGAATTCCGGAACTGGGAAGCCAGTGCTGCTTCACAAGGGAAGCCAAAGAGCCTGTGGGAGGAATTAGCGGAAATTGGTGAAGAGTTTGTGGAATTTTTAGAGAAAGAGCTCAACATCACTGACTCGGAAGTTGAAGCAGAGGAATATGGAGGGTCTCAGAAGGCAAATCCATTTACAAGTTCTGAAACAGGGACGACAGGAGGTGGTGGTCAAAGTAAAGGCGGTCAAGGGAGCAGCATTGAAGAAAATATTGATGAGATCGAAGCTACTCTTGCTAAGTTGAAAAAGGAATTGGGCCTATAG 849 0.4335 MNMHGITLPLALQLHFSPPLFYLQNLPKSSLPISRIASAPHFNPLFFTPNRRNNGKNKRRNSTLLKASRRESPYEVLGVSPSASPDQIKRAYRKLALKYHPDVNKEANAQEKFMRIKHAYNALMNSESRRKYDSGSRASNYTYSNAERNQSRDTQEEEFYGFGNFVRDVQMTVEDFFRDLQEEFRNWEASAASQGKPKSLWEELAEIGEEFVEFLEKELNITDSEVEAEEYGGSQKANPFTSSETGTTGGGGQSKGGQGSSIEENIDEIEATLAKLKKELGL* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0536 282 Pfam DnaJ domain 73 133 IPR001623 -
Vvi6g0536 282 ProSitePatterns Nt-dnaJ domain signature. 113 132 IPR018253 -
Vvi6g0536 282 Gene3D DnaJ domain 69 191 IPR036869 -
Vvi6g0536 282 SMART dnaj_3 71 128 IPR001623 -
Vvi6g0536 282 ProSiteProfiles dnaJ domain profile. 72 136 IPR001623 -
Vvi6g0536 282 Coils Coil 259 279 - -
Vvi6g0536 282 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 50 220 - -
Vvi6g0536 282 MobiDBLite consensus disorder prediction 225 266 - -
Vvi6g0536 282 SUPERFAMILY Chaperone J-domain 40 132 IPR036869 -
Vvi6g0536 282 PRINTS DnaJ domain signature 108 128 IPR001623 -
Vvi6g0536 282 PRINTS DnaJ domain signature 92 107 IPR001623 -
Vvi6g0536 282 PRINTS DnaJ domain signature 74 92 IPR001623 -
Vvi6g0536 282 MobiDBLite consensus disorder prediction 127 155 - -
Vvi6g0536 282 CDD DnaJ 73 125 IPR001623 -
Vvi6g0536 282 MobiDBLite consensus disorder prediction 235 261 - -
Vvi6g0536 282 MobiDBLite consensus disorder prediction 135 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0536 Vvi-Chr6 6081003 6083923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0536 68 134 C2H2 Transcription Factor Family AT1G74250 42.466 3.07e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0536 - - vri:117915923 540.036