Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0534 ATGGGCGAAGAAGTGAGGATGAGTGATATTAACGGAGGTGATGGCGGCGATGACGAGCGAGTGCTCGAGTGGGAGGCGGGGCTGCCCGCTGCCGATGATCTGACTCCCCTATCTCAGCCGTTGATCCCTCCGGAGCTGGCGTCGGCGTTCAGCATAACGCCGGAGCCGTGCCGTACGCTGCTGGAGGTGAATCGTGCGTCGCAGAGTACGTTTTCGACCATTCGAGGGCAGTCTCATTCGTTCTCGTCGAACAATTTCAAGTCTTTCAACGAGGAGCGAAACCGCGAGCCAGCGGTGGTGGAGCCGGAGGAGACCGGGGATAGGGACGGGTCCGGGTCTGAGTCAAGGAAGGTGAGGAAAGTCGATTGCGCCGAGGAGGCCGATTCAGCGATGAGGACGGAGAATTCGAACGATGATCCCTCTGCTCGGACGCTGAAACGACCCCGTTTGGTTTGGACTCCGCAGCTCCACAAGCGATTCGTGGATGTGGTGGGGCATCTGGGCATCAAGAACGCGGTTCCGAAGACGATTATGCAATTGATGAACGTAGAGGGCTTGACTCGGGAGAACGTCGCCAGTCATCTACAGAAGTATCGACTTTACCTGAAACGGATGCAGGGGCTGTCTAACGAGGGTCCATCTTCGTCCGACCATCTTTTCGCGTCCACGCCGGTGCCGCAGAGCTTGCACGAGTCTGGCGGAAGTGTGCATGGGAACGGTCATGGAAATGGTCACATGTCTGTTCCAATTCCCATGCCTTATGGGCAGACGATGATGCACATGCCCGTTCTTGGAGTGTCACATGGCCATGGCCAAATGGGAATGTCAGGTCCAGGTGGATATCATGGCTACGAGTCTCATCATCCTTATAATATGTTGCAGCAGAGAGATTGGTCAGTTGTGTCGTACCCAAATGTCGGTCCTAATGATCAATAA 936 0.5566 MGEEVRMSDINGGDGGDDERVLEWEAGLPAADDLTPLSQPLIPPELASAFSITPEPCRTLLEVNRASQSTFSTIRGQSHSFSSNNFKSFNEERNREPAVVEPEETGDRDGSGSESRKVRKVDCAEEADSAMRTENSNDDPSARTLKRPRLVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDHLFASTPVPQSLHESGGSVHGNGHGNGHMSVPIPMPYGQTMMHMPVLGVSHGHGQMGMSGPGGYHGYESHHPYNMLQQRDWSVVSYPNVGPNDQ* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0534 311 SUPERFAMILY Homeodomain-like 144 204 IPR009057 -
Vvi6g0534 311 Pfam Myb-like DNA-binding domain 151 199 IPR001005 -
Vvi6g0534 311 MobiDBLite consensus disorder prediction 1 20 - -
Vvi6g0534 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 203 IPR017930 -
Vvi6g0534 311 MobiDBLite consensus disorder prediction 71 143 - -
Vvi6g0534 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 148 200 IPR006447 GO:0003677
Vvi6g0534 311 Gene3D - 144 206 - -
Vvi6g0534 311 MobiDBLite consensus disorder prediction 71 88 - -
Vvi6g0534 311 FunFam Two-component response regulator 143 206 - -
Vvi6g0534 311 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 277 IPR044841 GO:0003700|GO:0006355
Vvi6g0534 311 MobiDBLite consensus disorder prediction 89 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0534 Vvi-Chr6 6067797 6068732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0534 1 290 G2-like Transcription Factor Family AT3G46640 55.892 2.81e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi6g0534 Myb_DNA-binding 9.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0534 - - vvi:100253567 611.298