Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0531 ATGGCTTCGACGACGTCTTATTGGTGTCACAGATGCACTCGTTTCGTTAGAGTTTGGGCTCAAGATAGCATCGTGTGTCCGTACTGCGAGAGTGGCTTCTTGGAGGAGATTGAGGCCACGCCGAGATCGGAGAATCACCACCGTCGGTTTCCGGCGACTGCGATGTACATGCTGGGGAACAACCGGCCGGATTCGGAGCAAAGTGCGAATCTAGGGTTGCGGCGGAGCAGGAGGAACGCCGGTGATCGGTCTCCGTTTAATCCAGTTATTGTGCTCCGCGGTCCGGCTGATGGAGGTGGTGGTGAAGGTGGTGTTGTGGAGAGGAGTAGTTTTGAATTGTACTACGATGACGGGGCAGGGTCCGGGCTTCGGCCGTTGCCGGCGACCATGTCGGAGTTCTTGATGGGGTCGGGGTTTGATCGGTTGCTGGAACAGCTTTCGCAGATTGAAATCAATGGTTTTGGGCGCGGCGAGCACCCTCCGGCGTCAAAGGCGGCCGTGGAGTCGATGCCGACGATCGAGATCGTGTCTAGCCACATCGTCACAGAGTTGCACTGTGCGGTATGCAAAGAGGCGTTCCAGCTGGGTTCGGAGGCTCGCGAAATGCCCTGTAAGCATATCTATCATTCCGATTGTATTCTCCCATGGCTATCTCTCCGCAATTCATGCCCTGTTTGCCGCCACGAGTTGCCGACGGACGTTCCCGGAACAAGGAACTCGCCGGTATCTGGAAATGAAGCACTTTCTCCGGCACCAAACGAAGAAGAGACAGTGGGGCTGACCATATGGAGGCTTCCTGGCGGTGGGTTTGCCGTGGGGAGGTTTTCCGGAGGAAGAAGAGCCGGCGAGCGTGAGCTTCCTGTGGTGTACACAGAAATGGATGGTGGGTTCAATAATAGTGGTGCTCCAAGGAGGATTTCATGGGCATCCAGACGAAGCCGATCCAGAGAGAGCGGCGGATCACTGGGCAGAGCTTTTCGCAACATTTTCTCATTTTTAGGGAGGTTTAGGTCTTCTTCCTCATCATCTTCTCGTTCAACTTCAGAACCTGGGTCCATTACCAGAAGTCACAGTCACTCAAGTTCGGTTTTCAGTAGATACGTTCGGAGGAGGAGCAGAGCTTGGGTACTGGAAGATCAAAGTGGAAATTCAAGATGGTGA 1161 0.5444 MASTTSYWCHRCTRFVRVWAQDSIVCPYCESGFLEEIEATPRSENHHRRFPATAMYMLGNNRPDSEQSANLGLRRSRRNAGDRSPFNPVIVLRGPADGGGGEGGVVERSSFELYYDDGAGSGLRPLPATMSEFLMGSGFDRLLEQLSQIEINGFGRGEHPPASKAAVESMPTIEIVSSHIVTELHCAVCKEAFQLGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPTDVPGTRNSPVSGNEALSPAPNEEETVGLTIWRLPGGGFAVGRFSGGRRAGERELPVVYTEMDGGFNNSGAPRRISWASRRSRSRESGGSLGRAFRNIFSFLGRFRSSSSSSSRSTSEPGSITRSHSHSSSVFSRYVRRRSRAWVLEDQSGNSRW* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0531 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 233 IPR013083 -
Vvi6g0531 386 SUPERFAMILY RING/U-box 166 234 - -
Vvi6g0531 386 Pfam zinc-ribbon 5 37 IPR039525 GO:0061630
Vvi6g0531 386 Pfam Ring finger domain 185 227 IPR001841 -
Vvi6g0531 386 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Vvi6g0531 386 Pfam Protein of unknown function (DUF1117) 258 369 IPR010543 -
Vvi6g0531 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 68 231 - -
Vvi6g0531 386 CDD RING-H2_RNF126-like 186 227 - -
Vvi6g0531 386 MobiDBLite consensus disorder prediction 301 320 - -
Vvi6g0531 386 SMART ring_2 186 226 IPR001841 -
Vvi6g0531 386 FunFam E3 ubiquitin-protein ligase RING1-like 148 233 - -
Vvi6g0531 386 MobiDBLite consensus disorder prediction 337 358 - -
Vvi6g0531 386 MobiDBLite consensus disorder prediction 60 74 - -
Vvi6g0531 386 MobiDBLite consensus disorder prediction 58 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0531 Vvi-Chr6 6020682 6021842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0531 125 233 C3H Transcription Factor Family AT5G01980 49.541 1.76e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0531 - - vvi:100265659 728.013