Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0530 ATGAATCTGTCCCCCATTCTGCGAATTCCAGTGATTTCAGGTAAGGAGGTTTGCGGTCACTCCTGCGACCATGAGTTTTGTTTTTCGTGGGTCTCGAGCAGATATAGAAAGTGGACTTCCAGGATTTATTCCTCAGAGACCTGCAGTGTGCTTTTGCTGTTTATGATTTTGAACTCTCATCAGATGTCACCAAACTTTCTGCTCTGGCTAGTTGTGGGGTTCTTTTTTATGGCCACGAGCTTGAGGATGTATGCAACTTGTCAACAACTACAAGCTCATGCCCAAGCTCATGCTGCAGCTGCCAGTGGCCTACTTGGTCATACTGAATTGCGTTTGCGTATGCCACCATCAATAGCTTTTGCAACTAGAGGGCGATTACAAGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCACTGAGTGAGGAAGAGATCAATGCTTTACCTGTTCACAAGTATAAGGTCACTGGTCCACAAAGTGAGGGGTCATCAATGCAACAGGCTGCATCTTCTTCAGCCTCAGCTGAGTTTGACGAGAAGGCTAGGCAAGACTCTAGAAAGGGGGACAGCAGCATGAAGGGTTCAGAAGATGAACTGACATGCAGCATTTGCTTGGAGCAAGTCAACAGGGGAGAGCTTGTACGTAGCTTGCCATGCTTGCACCAGTTCCATGCCAACTGTATTGATCCATGGCTGCGACAACAAGGCACATGCCCTGTCTGTAAATTTAGGGTCGGGGCAGGATGGCAGGAGAGCAGGGAGAGTGAAATAGATGATGCAGAAATGGTTTAA 855 0.4678 MNLSPILRIPVISGKEVCGHSCDHEFCFSWVSSRYRKWTSRIYSSETCSVLLLFMILNSHQMSPNFLLWLVVGFFFMATSLRMYATCQQLQAHAQAHAAAASGLLGHTELRLRMPPSIAFATRGRLQGLRLQLALLDREFDDLDYETLRSLDSDNTSSTSLSEEEINALPVHKYKVTGPQSEGSSMQQAASSSASAEFDEKARQDSRKGDSSMKGSEDELTCSICLEQVNRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRVGAGWQESRESEIDDAEMV* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0530 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 269 IPR013083 -
Vvi6g0530 284 CDD RING-H2_PA-TM-RING 221 263 - -
Vvi6g0530 284 ProSiteProfiles Zinc finger RING-type profile. 222 263 IPR001841 -
Vvi6g0530 284 MobiDBLite consensus disorder prediction 178 197 - -
Vvi6g0530 284 SMART ring_2 222 262 IPR001841 -
Vvi6g0530 284 Pfam Ring finger domain 221 263 IPR001841 -
Vvi6g0530 284 SUPERFAMILY RING/U-box 217 267 - -
Vvi6g0530 284 MobiDBLite consensus disorder prediction 198 215 - -
Vvi6g0530 284 PANTHER TARGET OF ERK KINASE MPK-1 42 268 - -
Vvi6g0530 284 MobiDBLite consensus disorder prediction 176 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0530 Vvi-Chr6 6014758 6018640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0530 49 284 C3H Transcription Factor Family AT3G55530 75.000 1.88e-115 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0530 K16283 - vvi:100260437 390.963