Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0519 ATGGCAGTTCATGCTCAAAATTCTGAGCCACCCAATGTTTTTGATGAGGCATTGCTCTATAACGATTTAAATATGTCCAAGCTTTGTATTAATGATGATGAAGCAAGCAAGAAGTTGCAGCAGAATGAGCGATCAAAAGGGTCTAATACTAAAGTAGGCCGCGTTAAGAGGCGCAGTAAAGGGGAAGTGGTGGATTTGAGGTCACTTTTAATTCAATGCGCACAAGCTGTGGCGGGCAATGATCAGAGAGCTGCAACTGAACTACTGAAGCTGATTAGGCAACACTCCTCTCCTATGGGTGATGGGTCCCAAAGATTGGCTCATTTCTTTGCTAATGGCCTTGAGGCACGCCTGGTTGGCCTTGGAATGAAGATATATGAAGAGTACAAAGCCCCAGGTATTGAAAGGCCGTTAGCTGCTGATATCATAAGAGCTTACAAGGTATATGCCTCAGCATGCCCTTTCAAGAGAATGTCGTATTTCTTTGGAAACTGGATGATTGGGAAAGTAGCTGAGAAAGCAACAAGGCTGCACATTATTGATTTTGGTATTCTCTTTGGTTTCCAATGGCCTTCCTTTATCCAGCATCTCTCACAGAGGCCTGGTGGGCCTCCCAGACTACGCATTACTGGAATAGACTTTCCTCAACCCGGTTTTCGGCCAGCTGAAAGGGTTGAGGATTCAGGATATCGCTTAGCAGATTATTGTAATAGATTTAAGGTCCCTTTTGAGTACCATGCCATAGCGGAGAAGTGGGAAAATATTAGACTTGAGGATCTCAAGATTGACAAAGATGAGAAGCTTGTTGTGAACAGTTTGTATAGGTTAAAGAACCTGCTGGATGAGACCGTAGTGGAAGACTGTCCTAGGGATGCCGTTCTCAACCTAATCAGGAGGATCAATCCAGAAATTTTCATCCATGGAATTGTGAGTGGTTCCTTCAATGGCCCCTTCTTCCTACTTAGGTTTAAGGAGGCACTCCACCAGTATGATGCACTATTTGACATGCTTGATGCTACTGTACCACGAGAAGATCAAGATAGGATGCTGTTTGAGAAAGTGGTATATGGAAGGTATTCCATGAATATCATAGCTCATGAGGGTTCAGAGAGATTTGAAAGGCCAGAAACATACAAGCAGTGGCAGGCTCGGAATGTGAAGGCGGGTTTCAGGCAGCTTCTTTTAGACCAGGAGATCTTGTCCAGAGTGAGAACTACTGTGAAGCAAGGTTTTCATAAGAATTTTATGGTGGAGGAGGATGGTGGGTGGATGCTGCAGGGTTGGAAGGGGAGAACAATCCATGCTCTCTCCTGTTGGAAGCCTTGCTAG 1329 0.447 MAVHAQNSEPPNVFDEALLYNDLNMSKLCINDDEASKKLQQNERSKGSNTKVGRVKRRSKGEVVDLRSLLIQCAQAVAGNDQRAATELLKLIRQHSSPMGDGSQRLAHFFANGLEARLVGLGMKIYEEYKAPGIERPLAADIIRAYKVYASACPFKRMSYFFGNWMIGKVAEKATRLHIIDFGILFGFQWPSFIQHLSQRPGGPPRLRITGIDFPQPGFRPAERVEDSGYRLADYCNRFKVPFEYHAIAEKWENIRLEDLKIDKDEKLVVNSLYRLKNLLDETVVEDCPRDAVLNLIRRINPEIFIHGIVSGSFNGPFFLLRFKEALHQYDALFDMLDATVPREDQDRMLFEKVVYGRYSMNIIAHEGSERFERPETYKQWQARNVKAGFRQLLLDQEILSRVRTTVKQGFHKNFMVEEDGGWMLQGWKGRTIHALSCWKPC* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0519 442 ProSiteProfiles GRAS family profile. 57 440 IPR005202 -
Vvi6g0519 442 Pfam GRAS domain family 66 440 IPR005202 -
Vvi6g0519 442 MobiDBLite consensus disorder prediction 38 57 - -
Vvi6g0519 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 429 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0519 Vvi-Chr6 5942791 5944119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0519 2 442 GRAS Transcription Factor Family AT1G07530 51.002 4.84e-162 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi6g0519 GRAS 3.7e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0519 - - vvi:100245086 903.664