Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0518 ATGGATACCCTTCTCGGAGAATTTTCTGGTTCCATGCCAGAATTCAAATTCGACCATGACTCGGTGTCGGTCTCCAGCTATTCAGATCAGAATCTTGTTGAGAGATCCAACAAGCTCAGTCAGGGCACCATGGATCCTCCTTTCCTACCAACCAATCATCAGCCTTGTAACTCGGCCACATCTGGGGCGACACCGGAAGGGCCTCCAACTGAAGAAGGCGACTTCTCCGTTGCTATGTACAAGTACATAGGTGATATTCTTATGGAAGAGGACTTGGAGGATAAGAATTGCATGTTGCAGGACAGCGTGGCCCTCCTAGCTGCTGAGAAATCCTTCTATGATGTTCTTGGTGAGCCGTTTCTCCCTCAACCCAATTCCCCTCAGTCTATTGGTCGAAACATCGAGAGCCCAGATGATAATCCTGTGACAAGTTGCAGCAGTTCCAGTAGTAACAGCGATGCTACTGCTAATAGCTTTGTTGAATCAGACTGGGCAGGCCAGTTTGAAGCCTCCTACCTGCAAACCCCTCTTGTGAATCAGGTATGGCAGTCCAATGTTATGTCGAATTCACAGTTCATAGACTCTCCTGTAAGTGCCCCTTTGAAAGGTGGTTTATTTAGGGAGAGCCAATCTGTTGAACGTGTAATTTATGATCTGGAGAACAATATAGCGATTCCTTTTGAAGCGAATGGAAAGGCTCTGGAGACGGAAAAGGGTGGTATCAGAGGAAAGAAAAAGCAACAACGGGGTGATGGTTATGATTCAGAAGAGAGGAGCACGAAACAATCTGCACTTTATGCTGAAGAGTGTGAGCCATCTGAGGTTTTCGACAGTGCATTGCTCTGTGAAGATTTAAATGTGTCTGGAATTTGTATCGTTGAGGAGGAAGCAAGAAAGAAATTGCAGAAGAATGGGGAATCAAAAGCTAATGGTAAAGCAGGGCGTCGTAAGAAACAGGGCAACAAAGGGGAAGTTGTGGATTTGAGGGCACTTCTAACGCAGTGCGCGCAGGCTCTGGCCGGCAGTAATCTGAGGTCTGCAAATGACCTTCTGAAGATGATCAGGCAGCACTCCTCTCCTTGTGGCGATGGGGTTCAAAGGTTGGCTCATTTCTTCGCTAATAGCCTTGAAGCACGCTTGTCTGGCACCGGATTGGAGATGTCTAAAGCCCTCGTTAGGAAAAGAACGCCGGCTGGTGATATAATAAAGGCGTACAGGTTATATGTCACAGTATGTCCTCTTAGGAGGATGAGTCATAAATTTGCAAATCGAACCATGGCAAAACTAGCTGAGCGAGAAACAAGGTTGCACATTATCGATTTCGGTATTCTCTACGGTTTCCAATGGCCCTGCCTTATCCAGCTCCTCTCATCCAGACCCGGCGGCCCTCCCAAGCTTCGGATTACCGGAATAGACCATCCACAACCTGGATTTCGCCCAGAAGAAAGAGTTGAGGAGACAGGCCGAAGATTAGCAAATTATTGTGACAGATTTAATGTCCCATTTGAGTACAAAGCCATAGCACAGAAGTGGGATACCATTCGACTTGAGGATCTCAAGATTGAGAAAGACGAGGTTGTTGTTGTGAACTGTTTGTATCGGCTGAAGAACCTGCTTGATGAAACAGTAGTTGCCAACAGTCCAAGGGATGCTGTTCTGAAATTAATCAGGGAGATTAACCCTGCTGTGTTCATCCATGGGGTTGTTAATGGGACTTTCAACGCCCCCTTCTTCGTCACACGGTTTCGGGAGTCGCTCTTCCACTACGATACACTGTTTGATATGTTTGAGGCAACTGTACCCCGTGAAGATCAAGAGAGGATGCTGTTTGAGCGGGAGATATTTGGAATGGATATTATGAACATCATAGCATGTGAGGGTTCAGAGAGGTTCGAAAGGCCAGAAACATACAAGCAGTGGCAGATCCGGAATGTGAGGGCAGGGTTGAGGCAACTTCCATTAGACCAGGAGATAGTGACAAATGTGAGGAGTACTGTGAAGTTGGATTACCATAAGGATTTTGTTGTGGATGAGGATGGTGGGTGGATGCTACAAGGTTGGAAGGGGCGAATCATCTACGCCATCTCCTGTTGGAAACCTCATTCTGAGCTTTGA 2115 0.4681 MDTLLGEFSGSMPEFKFDHDSVSVSSYSDQNLVERSNKLSQGTMDPPFLPTNHQPCNSATSGATPEGPPTEEGDFSVAMYKYIGDILMEEDLEDKNCMLQDSVALLAAEKSFYDVLGEPFLPQPNSPQSIGRNIESPDDNPVTSCSSSSSNSDATANSFVESDWAGQFEASYLQTPLVNQVWQSNVMSNSQFIDSPVSAPLKGGLFRESQSVERVIYDLENNIAIPFEANGKALETEKGGIRGKKKQQRGDGYDSEERSTKQSALYAEECEPSEVFDSALLCEDLNVSGICIVEEEARKKLQKNGESKANGKAGRRKKQGNKGEVVDLRALLTQCAQALAGSNLRSANDLLKMIRQHSSPCGDGVQRLAHFFANSLEARLSGTGLEMSKALVRKRTPAGDIIKAYRLYVTVCPLRRMSHKFANRTMAKLAERETRLHIIDFGILYGFQWPCLIQLLSSRPGGPPKLRITGIDHPQPGFRPEERVEETGRRLANYCDRFNVPFEYKAIAQKWDTIRLEDLKIEKDEVVVVNCLYRLKNLLDETVVANSPRDAVLKLIREINPAVFIHGVVNGTFNAPFFVTRFRESLFHYDTLFDMFEATVPREDQERMLFEREIFGMDIMNIIACEGSERFERPETYKQWQIRNVRAGLRQLPLDQEIVTNVRSTVKLDYHKDFVVDEDGGWMLQGWKGRIIYAISCWKPHSEL* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0518 704 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 262 693 IPR005202 -
Vvi6g0518 704 Pfam GRAS domain family 328 699 IPR005202 -
Vvi6g0518 704 MobiDBLite consensus disorder prediction 302 321 - -
Vvi6g0518 704 ProSiteProfiles GRAS family profile. 319 699 IPR005202 -
Vvi6g0518 704 MobiDBLite consensus disorder prediction 123 154 - -
Vvi6g0518 704 MobiDBLite consensus disorder prediction 238 260 - -
Vvi6g0518 704 MobiDBLite consensus disorder prediction 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0518 Vvi-Chr6 5938487 5940601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0518 81 702 GRAS Transcription Factor Family AT1G07530 46.491 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi6g0518 GRAS 3e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0518 - - vvi:100267399 1390.94