Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0517 ATGGATTCCATTCCTAGAAAATTTTCAGGCTCCAAGAACGGGCAAAAATTGTACCACGAGTCGGTTTCCATTAATTCAGATCATAATGTTGTTGAGAGATTCATGGATCCTCCTTTCCTCCCGACCAAATCTCATCCTTACAACTCGGCTACAGTTTCTGGTGCCAGATTGGAGGAGGATTCTGCAGAGGACTGCGAGTTATCCATTGCAATGCTCAAGTACATGGGCGAGATTCTTATGGAAGACGAATTGGAAGACAAGAACTGCATGTTTCAGGACTGCGTGGCCCTCCTAGCTGCTGAGAAATCCTTCTATGATGTCCTCGGAAACCGGTCTCCTCCTCAGCCTCCGCCCAATCCTCCTCCATATCACGTCCATCTCCATAGTCCGGATGATGCTTCTGTGCTGGGTTGCAGCAGTTCCAGTGGTAACAGCAATGCTGCTGCCAACAACTTTGTTGAATTCGAAATGGTTGAGTTAGGCCAGTTAGAAGCCTCTCGTGTGCCAACGCCTCTTGTAAATCACATACTGCAGCCGAATACATGGATTCCTTTTGAAGAAAATGATGCAGAGGCAGATAGGAGGTCTTACTCATCCAATGGGCCGAGGGGAAGGAAAAATCAACACCCAGATGAAGGCGATGATTCCCAAGGCAGATGTAGCAAGCATTCAGCACTCTACACTGAAGAGCCTGATGAACCATCTGATGAGATGTTTGATAGTGCCTTGCTCCCACGTGATGGTGAAGCAGGCAAGAAGTTGCATCAGAACGAGCAATCAAAAGGGTCGAATGGCAAAGCAGGTCGTGTTAAGAAGAAGCACAACAAAGGGGAACTGGTGGATTTGAATGCACTCTTAATTCAATGTGCACAAGCCGTGGCAGCCTACAATCAGAGAGCTGCAAATGATATACTGAAGCTGATTAGGCAACACTCCTCTCCTTTCGGCAATGGATCTCAAAGATTGGCACATTTCTTCGCAAACAGCCTTGAGGCACGACTTGCTGGAACAGGATTACAAATGTATACAGCCCTTGCCACCAAGAGGACATCAGTTGCTGATGTGATCAAAGCCTACCAGTTATACGTCTCAGCCTGCCCTTTCAAAAGGATGTCAAATAGATATGCCAATCGGGTGATTGCAAAGCTAGCCGAGGGTGCAACAAGGCTGCATATTATTGATTTTGGCGTCCTCTATGGTTTCCAGTGGCCCTGCCTCATCCAGTTCCTCTCTCTGAGACCTGGTGGGCCTCCCAAGCTCCGCATCACTGGGATAGATTTTCCTCAGCCTGGTTTCCGGCCGGCAGAAAGGGTTGAGGAGACAGGACGCCGCTTAGCCAATTATTGTAAGAGATTCAAGGTCCCATTTGAGTACAAAGCCATAGCGCAAAGGTGGGAGACTATTAAAGTTGAGGACCTGGAGATTGACAGAGATGGGGTGCTTGTTGTGAATAGCATTTATCGGATGAAGAACCTGCTTGACGAAACAGTAACAGACAAGTGCCTCAAGGATGCAGTTCTGGAACTGATCAGGAGGATTAATCCAGATATTTTCATCCATGGTGTTTTAAATGGAAACTTCAATACGCCCTTCTTCTTTACACGGTTCCGGGAGGCACTGTTCCACTTCGATGCGTTGTTTGATATGTTAGATGCTTCAGTGCCACGTGAAGATGAAGGAAGGATGATGTTTGAGAGAGAGATATATGGAAAAGATATCATGAACATCATAGCATGTGAGGGCTCAGAGAGGATTGAAAGGCCGGACATTTACAAGCAGTGGCAAGCTCGGAATGAGAGGGCAGGGTTGAGGCAGCTTCCCTTAGAGCAGGAGATACTGATGAAAGTGAGGAATATCGTGAAGATGGATTACCACAAGGATTTTGTGGTGGAAGTGGATGGCGGGTGGATGCTCCACGGTTGGAAGGGGCGAGTCATCTATGCCATCTCCTGTTGGAAGCCTTGCCACCACCTTTGA 1977 0.475 MDSIPRKFSGSKNGQKLYHESVSINSDHNVVERFMDPPFLPTKSHPYNSATVSGARLEEDSAEDCELSIAMLKYMGEILMEDELEDKNCMFQDCVALLAAEKSFYDVLGNRSPPQPPPNPPPYHVHLHSPDDASVLGCSSSSGNSNAAANNFVEFEMVELGQLEASRVPTPLVNHILQPNTWIPFEENDAEADRRSYSSNGPRGRKNQHPDEGDDSQGRCSKHSALYTEEPDEPSDEMFDSALLPRDGEAGKKLHQNEQSKGSNGKAGRVKKKHNKGELVDLNALLIQCAQAVAAYNQRAANDILKLIRQHSSPFGNGSQRLAHFFANSLEARLAGTGLQMYTALATKRTSVADVIKAYQLYVSACPFKRMSNRYANRVIAKLAEGATRLHIIDFGVLYGFQWPCLIQFLSLRPGGPPKLRITGIDFPQPGFRPAERVEETGRRLANYCKRFKVPFEYKAIAQRWETIKVEDLEIDRDGVLVVNSIYRMKNLLDETVTDKCLKDAVLELIRRINPDIFIHGVLNGNFNTPFFFTRFREALFHFDALFDMLDASVPREDEGRMMFEREIYGKDIMNIIACEGSERIERPDIYKQWQARNERAGLRQLPLEQEILMKVRNIVKMDYHKDFVVEVDGGWMLHGWKGRVIYAISCWKPCHHL* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0517 658 MobiDBLite consensus disorder prediction 187 220 - -
Vvi6g0517 658 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 229 647 IPR005202 -
Vvi6g0517 658 MobiDBLite consensus disorder prediction 252 272 - -
Vvi6g0517 658 MobiDBLite consensus disorder prediction 108 141 - -
Vvi6g0517 658 MobiDBLite consensus disorder prediction 111 125 - -
Vvi6g0517 658 Pfam GRAS domain family 283 653 IPR005202 -
Vvi6g0517 658 ProSiteProfiles GRAS family profile. 273 653 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0517 Vvi-Chr6 5930838 5932814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0517 61 654 GRAS Transcription Factor Family AT2G29060 44.640 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi6g0517 GRAS 6e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0517 - - vvi:100257123 1313.52