Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0516 ATGAATGGTATCGAATTCAATGGTCAAGCCTTTTTGACTGGTTCAGATCAGTATCCGAATTTTGAAAATGGATTCACATTTGATGCTCACTCGCCTCTAGATCTTAACTTCTTAGATCATCCTTTTCTTCCTCCTGATGTGAACCTGGGTGTGTTTGCTCAATCTTCGAGCTTGAGCCCAGATGGAGATTCTTCCGATGACGGTGACTCTTCTGATAGTTTTCTCAAGTACGTAAGCCAGGTGCTTATGGAAGAGAATCTGGAGGATAAAGCCTGTATGTTCCACGATCCGCTGGCGGTACAAGCTGCTGAGAAGTCGTTTTACGACGTTCTTGGTGGGCAAAATCCTACCTTCCGGAGTGAGCCCCCTGTTCATGTTGACCAAGTTGTTGACAGCCCGGATGATAGCGTTTCGGGCAGTAGCAGTGACTATGGTAGTTATAGCAGTCGTATCAATGGTACTAGTAATCTTCAGTGGAGTGCTGATGCTCACAATTCTGCGAACCATCAGTGGGTTGTTGATCCCGGTGATCGTAACTACAAATCCTCTTTCCTACAAAACCCTCTTCCTGAAAATTATGTTTTTGGGTCTGCTTTAGGATCAGCTTCGCCGTCTTCTGTCACCTCTTCTGATAGCTTCAGTAACATCGGTAATGGAGTTGTTGACTCTTCACCAAAAACAGTCTTGGTTCCAAATATTTTTAGTGATAGTGAGTCGATCTTGCAGTTCAAGAGAGGGGTAGAGGAAGCTAGTAAATTCCTTCCTAAGGCTACTAATCTTGTTATTGATCTGGGGAATGGCACATTGCCTCCACAATCAAAGGTGGAGACTCAAAGGGTGGTTGTGAAGACAGAGAAGGATGAGAGGGAGAATTCGCCTAAATGGTTAAGGAGAAGAAAGAATCTTCACAGGGCTGATATCGAATTAGAAGAAGGAAGGAGAAGCAAGCTGTCAGCCGTTGATTTGGAAGAAGACGATGATGAGCTATCGGAGATGTTTGATAAGGTGTTGCTATGTTCTGATGATAAAGCAGAGCCTTCTTACTATTGTACTGGTGATGAAGACCTGCATAATGGAATTTGCAATACCTGGCAGGTGTATGGAAGTGCACACTCTAATGGTGAAAAGACACGCATTAGAAAGCAGTCCAGTGGGAAGGAGGTTGTGGATTTTGGGACTCTGTTGATTCAGTGTGCACAAGCCGTCTCTGCTGATGATCACCGGACTGCTAATGAACTATTAAAGCAGATTAGGCAGCACTCATCCCCTTTTGGTGATGGTTATCAGAGGTTAGCTCATTGCTTTGCTGATGGCTTGGAAGCACGCTTGGCAGGCACTGGGACAGAGATTTATACTGTCCTAGCTTCCAAGAAGGTGTCAGCGGCTGCTATGTTGAAAGCTTATGAACTTTTTCTTGCAGCCTGCCCATTCAAGAAGATCTCTGCTTTCTTTGCAAACCATATGATTTTACGTCTAGCTGAGAAAGCAACAGTGATTCATGTCATCGATTTTGGTATCCTATATGGTTTTCAATGGCCCATCTTCATTCAACGACTCTCAGCCAGACCTGGAGGGCCTCCCAAGCTTCGAATTACAGGAATAGAGCTTCCCCAACCGGGCTTCCGGCCAGCAGAAAGAGTTGAGGAGACAGGGCGTCGACTGGCAAAATATTGTGAACGATTCAATGTTCCATTTGAGTACAATGCCATAGCACAGAAGTGGGAAACTATCCGAATTGAGGATCTTAAGATTGACAGGAATGAGGCGATTGCTGTGAACTGTCTCTTCCGGTCTAAAAACTTACTTGATGAGACAATTGTGGTGGACAGCCCAAGGAATGCTGTTTTGGGCTTAATCAGGAAAATCAACCCTCAGATTTTTGTCCATTCTATTATTAATGGTTCCTACAATGCCCCGTTTTTTGTCACACGGTTCCGGGAAGCACTGTTTCACTTCTCTGCAGTGTTTGACGTTTTGGATAATAACGCACCCCGTGAAAATGAGCAGAGGTTGATGTTTGAGAAAGAATTCTGCGGGCGGGAGGTGATGAATGTGATCGCATGTGAAGGATCCCAGAGGGTCGAGAGGCCGGAGACATACAAGCAGTGGCACGTTCGGACTCTGAAAGCTGGGTTCAGGCAACTCAAGTTAGATCAGCAGCTCGCAAAGAAATTGAAGACCAAGGTGAAAGTGGGCCATCATAAGGATTTTTTGGTTGATAAAGATGGGGATTGGCTGCTGCAGGGTTGGAAGGGCCGAGTTCTCTATGCTTCCTCCTGCTGGATTCCCACGTAA 2295 0.4536 MNGIEFNGQAFLTGSDQYPNFENGFTFDAHSPLDLNFLDHPFLPPDVNLGVFAQSSSLSPDGDSSDDGDSSDSFLKYVSQVLMEENLEDKACMFHDPLAVQAAEKSFYDVLGGQNPTFRSEPPVHVDQVVDSPDDSVSGSSSDYGSYSSRINGTSNLQWSADAHNSANHQWVVDPGDRNYKSSFLQNPLPENYVFGSALGSASPSSVTSSDSFSNIGNGVVDSSPKTVLVPNIFSDSESILQFKRGVEEASKFLPKATNLVIDLGNGTLPPQSKVETQRVVVKTEKDERENSPKWLRRRKNLHRADIELEEGRRSKLSAVDLEEDDDELSEMFDKVLLCSDDKAEPSYYCTGDEDLHNGICNTWQVYGSAHSNGEKTRIRKQSSGKEVVDFGTLLIQCAQAVSADDHRTANELLKQIRQHSSPFGDGYQRLAHCFADGLEARLAGTGTEIYTVLASKKVSAAAMLKAYELFLAACPFKKISAFFANHMILRLAEKATVIHVIDFGILYGFQWPIFIQRLSARPGGPPKLRITGIELPQPGFRPAERVEETGRRLAKYCERFNVPFEYNAIAQKWETIRIEDLKIDRNEAIAVNCLFRSKNLLDETIVVDSPRNAVLGLIRKINPQIFVHSIINGSYNAPFFVTRFREALFHFSAVFDVLDNNAPRENEQRLMFEKEFCGREVMNVIACEGSQRVERPETYKQWHVRTLKAGFRQLKLDQQLAKKLKTKVKVGHHKDFLVDKDGDWLLQGWKGRVLYASSCWIPT* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0516 764 MobiDBLite consensus disorder prediction 118 145 - -
Vvi6g0516 764 Pfam GRAS domain family 393 761 IPR005202 -
Vvi6g0516 764 ProSiteProfiles GRAS family profile. 382 762 IPR005202 -
Vvi6g0516 764 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 330 757 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0516 Vvi-Chr6 5925910 5928204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0516 75 764 GRAS Transcription Factor Family AT1G07530 53.717 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi6g0516 GRAS 2.9e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0516 - - vvi:100262198 1441.4