Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0515 ATGGCTGGTGGGGAGAGGCGGCGACTCAAGGGAGGAGATTCGGCCTTTTTGACCGATTCAGATCAGTTTCCAAATTTTGAGAATGGATTCAAATTCGATTCTCACTCGCCTCTAGATTTTAACTTCTTGGATCGTCCTGTTCTTCCTCCTGATATGAACCTGGGTGCGTTTGCTCCATCTTCGAGCTTGAGCCCAGATGGAGATTCTTCTGATGAAGGTGATGATAGTTTTCTCAAGTACGTAAGCCAGGTGCTTATGGAAGAGAATCTGGAGGACAAAGCTTGTATGTTCCATGACCCGCTGGCGCTACAAGCTGCTGAGAGGTCGTTTTACGAGGTTCTTGGTGGGCAAAATCCTCCTTCCCGGAATCAAACCCATCAAATTGTTGACAGTCCTGATGATAATGCTTGGAGTAGTTTCAGTGATTATAGTAGTTATAGCAGTCCTAGTAATGGCTCTAGCAATTCGGTGAACCATCAGTGGATTACTGATCCTGGCAATTCCACGAACCATCAGTGGGTCGTTGATCCTGGTGATCTTAACTACAAATCCTCTTTCTTACTGAACCCTCTACCTGAAAACTATGTTTTCAGCTCGACTATAGGATCTGGCTCACAGTCCTCCACAAACTCTTTTGATAGTTTCAGTAAGACTGGTAACGAGGCACCAAGCCCAGTCTTGGTTCCAAATATTTTTAGTGATAGCGAATCGGTGTTGCAGTTTAAGAGAGGAGTAGAGGAAGCTAGTAAATTCCTTCCTAAGGCTACTAATCTTGTTATTGATCTGGAGAATGGCACATTGCCCCCACAATCAAAGGTGGAGACTCAAAGGGTGGTCGTGAAGACAGAGAAGGATGAGAGGGAGAATTCACCTAAATGGTTGAGGGGACGAAAGAATCTTCACAGAGAAGATCATGAATTAGAAGAAAGGAGTAGAAAGCAGTCAGCAGTTCATCTGGAAGAAGACGAAGATGAGCTATCAGAGATGTTTGATAGGGTATTGCTATGTTCTGATCCTAAAGCAGAGCGTTCTTACTACTGTACTGGGGAAGAAGACTGCAATAGCTTGCAGCAGTCTGAACATCCACAGTCTAATGCTGAAAAGACACGCACTAAGAAGTCATCTAAGGAAGTGGTGGATTTGAGAACTCTGTTGATTCACTGTGCACAAGTTGTCTCTACCTATGATCTCAGGACTGCAAATGAACTACTAAAGCAGATTAGGCAGCACTCTTCCCCTTTTGGTGATGGATCGCAGAGGTTGGCTCATTTCTTTGCTGAAGGCCTGGAAGCACGCTTGGCAGGCACTGGGACAGAGATTTATACTGTCCTAGCTTCCAAGAAGGTGTCAGCTGCTGCTATGTTGAAAGCTTACGAACTTTTCCTTGCAGCCTGCCCATACAAGATGATCTCTATTTTCTTTGCGAACCATATGATTTTGCGTTTAGCTGAGAAAGCAAAAGTGCTTCATATTATAGATTTTGGTATCTTATACGGCTTCCAATGGCCTGGCCTCATCCAACGTCTCTCAGCAAGACCTGGAGGGCCTCCCAAGCTTCGAATTACAGGAATAGAGCTTCCCCAACCGGGTTTCCGGCCAGCAGAAAGAGTTGAGGAGACAGGGCGCCGACTGGCAAGGTATTGTGAACGATTCAATGTTCCATTTGAGTACAATGCCATAGCAAAGAAGTGGGAAACTATCCAAATTGAGGATCTCAAGGTTGACAGCAATGAGGTAATTGCTGTGAACAGCATGTTCCGGTTTAAGAATTTACTTGATGAGACAATTGTGGTGGACAGCCCAAGGAATGCGGTTTTGGGCTTAATCAGGAAAATTAATCCTCATATTTTCATCCATTCCATCACTAATGGTTCGTATAATGCACCATTCTTTGTCACACGGTTCCGGGAAGCACTGTTTCACTTCTCTGCAGTGTTTGATGCGTTGGGTAACAACATAGCCAGTGAAAATGAGCACAGGTTAATGTATGAGAAAGAATTCCTGGGGCAGGAGGTGATGAACGTCATAGCATGTGAGGGTTCTGAAAGGGTTGAGAGGCCTGAGACATACAGGCAGTGGCAGGTTCGGACCCTGAATGCTGGGTTCAGACAGCTCCCATTAAATCAGGAGCTCACAAAGAAATTGAAGACCAAGGTTAAGTTGGGTCACCACAAGGATTTTTTGGTGGATGAAGATGGGAATTGGCTGCTGCAGGGTTGGAAGGGACGAGTTCTCTTCGCTTCCTCCTGTTGGATACCCGCGTAG 2265 0.4534 MAGGERRRLKGGDSAFLTDSDQFPNFENGFKFDSHSPLDFNFLDRPVLPPDMNLGAFAPSSSLSPDGDSSDEGDDSFLKYVSQVLMEENLEDKACMFHDPLALQAAERSFYEVLGGQNPPSRNQTHQIVDSPDDNAWSSFSDYSSYSSPSNGSSNSVNHQWITDPGNSTNHQWVVDPGDLNYKSSFLLNPLPENYVFSSTIGSGSQSSTNSFDSFSKTGNEAPSPVLVPNIFSDSESVLQFKRGVEEASKFLPKATNLVIDLENGTLPPQSKVETQRVVVKTEKDERENSPKWLRGRKNLHREDHELEERSRKQSAVHLEEDEDELSEMFDRVLLCSDPKAERSYYCTGEEDCNSLQQSEHPQSNAEKTRTKKSSKEVVDLRTLLIHCAQVVSTYDLRTANELLKQIRQHSSPFGDGSQRLAHFFAEGLEARLAGTGTEIYTVLASKKVSAAAMLKAYELFLAACPYKMISIFFANHMILRLAEKAKVLHIIDFGILYGFQWPGLIQRLSARPGGPPKLRITGIELPQPGFRPAERVEETGRRLARYCERFNVPFEYNAIAKKWETIQIEDLKVDSNEVIAVNSMFRFKNLLDETIVVDSPRNAVLGLIRKINPHIFIHSITNGSYNAPFFVTRFREALFHFSAVFDALGNNIASENEHRLMYEKEFLGQEVMNVIACEGSERVERPETYRQWQVRTLNAGFRQLPLNQELTKKLKTKVKLGHHKDFLVDEDGNWLLQGWKGRVLFASSCWIPA* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0515 754 MobiDBLite consensus disorder prediction 1 21 - -
Vvi6g0515 754 ProSiteProfiles GRAS family profile. 372 752 IPR005202 -
Vvi6g0515 754 MobiDBLite consensus disorder prediction 114 134 - -
Vvi6g0515 754 MobiDBLite consensus disorder prediction 277 320 - -
Vvi6g0515 754 MobiDBLite consensus disorder prediction 354 373 - -
Vvi6g0515 754 MobiDBLite consensus disorder prediction 54 75 - -
Vvi6g0515 754 Pfam GRAS domain family 381 751 IPR005202 -
Vvi6g0515 754 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 333 746 IPR005202 -
Vvi6g0515 754 MobiDBLite consensus disorder prediction 116 134 - -
Vvi6g0515 754 MobiDBLite consensus disorder prediction 273 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0515 Vvi-Chr6 5918386 5921169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0515 20 754 GRAS Transcription Factor Family AT1G07530 52.442 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi6g0515 GRAS 8.3e-117 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0515 - - vvi:100251782 1432.16