Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0507 ATGCTTCTCCATAAGTACTCCACCCAGCTCCTTAGCTCCTCACCCTCTTCTCTCTCTCTCTCTCTCTTTCTCGCTCTAAAGAGTGGTGTTTGGTTTGTAGTGAGAGAGAAAATGGCTGTGGGCGTTGTGGTCTGCTTTGCTTCCCTTATCTCGTTATTCTCACTCGTTCAAGCTAAAATTCCTGGCGCCTACTCCGGCGGTGCTTGGCAGAGTGCTCACGCCACCTTCTACGGTGGCAGTGACGCCTCTGGCACTATGGGTGGAGCTTGTGGATACGGTAACCTTTACAGCCAAGGGTACGGCGTGAACACAGCTGCACTGAGCACAGCACTCTTCAACAATGGACTCAGTTGCGGCGCTTGTTTCGAACTCAAGTGCGCCAATGACCCCACGTGGTGCCACTCCGGCAGCCCCTCCATTCTTATCACCGCTACCAACTTCTGCCCACCAAACTATGCTCTTCCCAGCGACAATGGCGGCTGGTGCAACCCTCCCCGCCCCCACTTCGATCTCGCCATGCCCATGTTCCTCAAGATCGCTGAGTATCGTGCCGGGATCGTCCCCGTGGCTTTCCGCCGGGTGCCGTGCCGTAAGCAAGGAGGGATTAGGTTCACGATCAACGGCTTCCGGTACTTCAATCTGGTTCTGATCACCAACGTGGCAGGCGCAGGGGATATCGTGAGGGCGAGCGTAAAAGGGTCGAAGACAGGGTGGATGAGCCTGAGCAGGAACTGGGGTCAAAACTGGCAGTCAAACGCAGTGCTGGTGGGGCAATCGCTGTCGTTCAGAGTCACGGGGAGTGACAGGCGCACATCAACATCCTGGAACATCGCACCAGCGCATTGGCAGTTCGGTCAAACCTTCAGCGGCAAAAACTTCAGGGTGTGA 888 0.5597 MLLHKYSTQLLSSSPSSLSLSLFLALKSGVWFVVREKMAVGVVVCFASLISLFSLVQAKIPGAYSGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPTWCHSGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRASVKGSKTGWMSLSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIAPAHWQFGQTFSGKNFRV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0507 295 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Vvi6g0507 295 PRINTS Expansin signature 99 113 IPR002963 GO:0009664
Vvi6g0507 295 PRINTS Expansin signature 276 292 IPR002963 GO:0009664
Vvi6g0507 295 PRINTS Expansin signature 159 176 IPR002963 GO:0009664
Vvi6g0507 295 PRINTS Expansin signature 247 268 IPR002963 GO:0009664
Vvi6g0507 295 PRINTS Expansin signature 176 189 IPR002963 GO:0009664
Vvi6g0507 295 PRINTS Expansin signature 126 137 IPR002963 GO:0009664
Vvi6g0507 295 PRINTS Expansin signature 200 212 IPR002963 GO:0009664
Vvi6g0507 295 PRINTS Expansin signature 140 150 IPR002963 GO:0009664
Vvi6g0507 295 Pfam Expansin C-terminal domain 202 279 IPR007117 -
Vvi6g0507 295 SUPERFAMILY PHL pollen allergen 198 289 IPR036749 -
Vvi6g0507 295 SMART dpbb_1 104 191 IPR007112 -
Vvi6g0507 295 FunFam Expansin 201 293 - -
Vvi6g0507 295 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 87 201 IPR007112 -
Vvi6g0507 295 SUPERFAMILY Barwin-like endoglucanases 68 219 IPR036908 -
Vvi6g0507 295 PRINTS Expansin/Lol pI family signature 276 290 IPR007118 GO:0005576
Vvi6g0507 295 PRINTS Expansin/Lol pI family signature 108 126 IPR007118 GO:0005576
Vvi6g0507 295 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Vvi6g0507 295 PRINTS Expansin/Lol pI family signature 68 83 IPR007118 GO:0005576
Vvi6g0507 295 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Vvi6g0507 295 PRINTS Expansin/Lol pI family signature 184 200 IPR007118 GO:0005576
Vvi6g0507 295 Gene3D - 201 293 IPR036749 -
Vvi6g0507 295 Gene3D - 55 197 IPR036908 -
Vvi6g0507 295 CDD DPBB_EXPA_N 69 196 - -
Vvi6g0507 295 Pfam Lytic transglycolase 104 190 IPR009009 -
Vvi6g0507 295 PANTHER EXPANSIN-A15 50 293 IPR002963 GO:0009664
Vvi6g0507 295 FunFam Expansin 58 197 - -
Vvi6g0507 295 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 211 290 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0507 Vvi-Chr6 5817644 5819621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0507 38 295 Expansin Gene Family AT2G39700 86.434 1.12e-170 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0507 - - vvi:100263987 544.658