Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0502 ATGAAGTGCTTCCATTTCAACAACGGAGAGAGAAGAGAGGAGGAAGACGGCGTCCTTTCCAGGGCCTCCAAGGTCTCCTGGGCTCGTTCTCTCAGCGTCGCTTCCAGCAGTGCTGACGTCCGCCGCTCCGAGTTCGACTTTGATTCCAGGGACCTCTCCGACTCCGTGTCCTTCCACGAGTTCTTGGCGCAGAGGCGGGCCAATGATCTGCGGGTGTTCACCTTCTCGGAGCTCAAATCGGCGACTAGAGGGTTTAGTAGAGCTCTGATGATAGGGGAGGGAGGTTTCGGGTGCGTGTACAGAGGTGTGGTGAGGGTTCATGCTGATGAAGCTCCTGATTCAAAGATGGATGTTGCTGTAAAGCAGTTGAATCGAAATGGATTCCAGGGGCACAAGGAGTGGATCAACGAGGTGAACTTTTTAGGTGTAGTTAAGCACCCAAATCTGGTGAAGTTAGTGGGATACTGTGCAGAAGATGATGAAAGAGGGATCCAAAGGCTATTGGTTTATGAGCTTATGTGTAATAAAAGCTTGGAGGACCATCTGTTGGCTCGGGTACCATCATCGCTCCCGTGGATGACAAGACTAAAGATTGCTCAAGATGCTGCCCGTGGTTTGGCATACCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAAACATCAAATGTTCTGCTAGATGAGGACTTTAATGCAAAGCTCTCTGATTTTGGACTGGCTAGGCAAGGACCAAGTCAAGGAGTTAGTCATGTTTCAACATCAGTTGTAGGTACAGTTGGTTATGCAGCTCCGGAATATGTTCACACTGGCAGGCTAACTGCAAAGAGTGATGTATGGAGCTTTGGGGTGGTTCTATATGAGCTCATCACAGGAAGGCGAGCAGTGGAGAGAAACCTTCCTCGTAGTGAGCAGAAGCTCTTGGAATGGGTGAGACCTTATGTCTCGGACTCAAAGAAATTTCATCTTATTGTAGACCCGCGACTTGAAGGAGAGTATTGCATCAAATCAGCTCAGAAGCTTGCATCCCTAGCTAACAAATGCCTATCAAAGCAGCCAAAATCCCGTCCTAAAATGAGTGAGGTGGTTGAGATCCTGGGAAACATTATTAGTGAGATAGCACCCCAAGAAGAGGTTGCCCCACAACCCATCAATGAAACTGACAATGTGAAGGAAGAAGCCGAAGAGGAAACTGAGCCCATCAAACAGGGGAACAATTACCTGAGGAAGGTTTTTGATCTCAAAGACATGGTGAACTTAAGAACCAAATCTGTCGGGAAGTTAGATTGGAGAAATTGGACCCCTGGTATGGTAAGAACCTGGTAA 1332 0.4737 MKCFHFNNGERREEEDGVLSRASKVSWARSLSVASSSADVRRSEFDFDSRDLSDSVSFHEFLAQRRANDLRVFTFSELKSATRGFSRALMIGEGGFGCVYRGVVRVHADEAPDSKMDVAVKQLNRNGFQGHKEWINEVNFLGVVKHPNLVKLVGYCAEDDERGIQRLLVYELMCNKSLEDHLLARVPSSLPWMTRLKIAQDAARGLAYLHEEMDFQLIFRDFKTSNVLLDEDFNAKLSDFGLARQGPSQGVSHVSTSVVGTVGYAAPEYVHTGRLTAKSDVWSFGVVLYELITGRRAVERNLPRSEQKLLEWVRPYVSDSKKFHLIVDPRLEGEYCIKSAQKLASLANKCLSKQPKSRPKMSEVVEILGNIISEIAPQEEVAPQPINETDNVKEEAEEETEPIKQGNNYLRKVFDLKDMVNLRTKSVGKLDWRNWTPGMVRTW* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0502 443 SUPERFAMILY Protein kinase-like (PK-like) 68 368 IPR011009 -
Vvi6g0502 443 MobiDBLite consensus disorder prediction 383 402 - -
Vvi6g0502 443 Pfam Protein tyrosine and serine/threonine kinase 90 368 IPR001245 GO:0004672|GO:0006468
Vvi6g0502 443 PANTHER OS01G0588500 PROTEIN-RELATED 51 370 - -
Vvi6g0502 443 Gene3D Phosphorylase Kinase; domain 1 65 172 - -
Vvi6g0502 443 CDD STKc_IRAK 91 371 - -
Vvi6g0502 443 FunFam Serine/threonine-protein kinase BIK1 54 172 - -
Vvi6g0502 443 ProSiteProfiles Protein kinase domain profile. 85 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0502 443 ProSitePatterns Protein kinases ATP-binding region signature. 91 121 IPR017441 GO:0005524
Vvi6g0502 443 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 173 381 - -
Vvi6g0502 443 Gene3D Transferase(Phosphotransferase) domain 1 173 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0502 Vvi-Chr6 5736100 5739486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0502 71 401 Glycoside Hydrolase AT3G07070 47.633 1.85e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi6g0502 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0502 - - vvi:100258611 840.106