Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g0493 | ATGGACCTCCCCCTAGCTTCTCATCCTCTTCCACAACTACCATCACCCCCACCCCCACCCCTTCCTCCTACCCCTCCCCCTCTTCCTAATGCTGATGTTGTTGCTTCAGTACTCATTGGCTTCTTTTCTATATTCACTGCCCCACTGTTCATCTTTTTGGTTGTCCTCACCCTCTGCGGTTGGCTCAAGCGTTTCTTCAGAAGGAGAGATGATCATCAAACTCCAGAGCCGGATATCGAAATCGGAGCTACAAATCTTTATCATGATCATCGCCCCCCTTCTCATGATTTTAGTCCAAGAACACATGATGATATTAGTCAAAGATCTGTAGAGGAGAAGTGGATGGAAGTAGCGCCAAGCTTTGTGTTTGATAAAAGTAGGGCTGAGGAAGGTGGAATGAAGGGTAACGATGAATGTGTGATATGCTTGGAAGACATTAAAGATGGAGAGATATGTAGGGTTCTTCCTGAATGCAGCCATGTCTTCCATAAAGCATGTGTAGGCTTATGGCTGATGAAGAAAAGGGTCTGCCCCATATGCCGTCTTCGTGTTAAAGATACTGTACCAAATCTTGATTAG | 579 | 0.456 | MDLPLASHPLPQLPSPPPPPLPPTPPPLPNADVVASVLIGFFSIFTAPLFIFLVVLTLCGWLKRFFRRRDDHQTPEPDIEIGATNLYHDHRPPSHDFSPRTHDDISQRSVEEKWMEVAPSFVFDKSRAEEGGMKGNDECVICLEDIKDGEICRVLPECSHVFHKACVGLWLMKKRVCPICRLRVKDTVPNLD* | 193 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g0493 | 192 | CDD | RING-H2_PA-TM-RING | 138 | 181 | - | - | |
Vvi6g0493 | 192 | SMART | ring_2 | 139 | 180 | IPR001841 | - | |
Vvi6g0493 | 192 | MobiDBLite | consensus disorder prediction | 9 | 25 | - | - | |
Vvi6g0493 | 192 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 187 | IPR013083 | - | |
Vvi6g0493 | 192 | ProSiteProfiles | Zinc finger RING-type profile. | 139 | 181 | IPR001841 | - | |
Vvi6g0493 | 192 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 18 | 186 | - | - | |
Vvi6g0493 | 192 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vvi6g0493 | 192 | SUPERFAMILY | RING/U-box | 138 | 186 | - | - | |
Vvi6g0493 | 192 | Pfam | Ring finger domain | 137 | 181 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi6g0493 | Vvi-Chr6 | 5669875 | 5670453 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi6g0493 | 103 | 184 | C3H Transcription Factor Family | AT4G30370 | 43.902 | 1.80e-16 | 72.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g0493 | - | K10664 | vvi:104879547 | 362.073 |