Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0493 ATGGACCTCCCCCTAGCTTCTCATCCTCTTCCACAACTACCATCACCCCCACCCCCACCCCTTCCTCCTACCCCTCCCCCTCTTCCTAATGCTGATGTTGTTGCTTCAGTACTCATTGGCTTCTTTTCTATATTCACTGCCCCACTGTTCATCTTTTTGGTTGTCCTCACCCTCTGCGGTTGGCTCAAGCGTTTCTTCAGAAGGAGAGATGATCATCAAACTCCAGAGCCGGATATCGAAATCGGAGCTACAAATCTTTATCATGATCATCGCCCCCCTTCTCATGATTTTAGTCCAAGAACACATGATGATATTAGTCAAAGATCTGTAGAGGAGAAGTGGATGGAAGTAGCGCCAAGCTTTGTGTTTGATAAAAGTAGGGCTGAGGAAGGTGGAATGAAGGGTAACGATGAATGTGTGATATGCTTGGAAGACATTAAAGATGGAGAGATATGTAGGGTTCTTCCTGAATGCAGCCATGTCTTCCATAAAGCATGTGTAGGCTTATGGCTGATGAAGAAAAGGGTCTGCCCCATATGCCGTCTTCGTGTTAAAGATACTGTACCAAATCTTGATTAG 579 0.456 MDLPLASHPLPQLPSPPPPPLPPTPPPLPNADVVASVLIGFFSIFTAPLFIFLVVLTLCGWLKRFFRRRDDHQTPEPDIEIGATNLYHDHRPPSHDFSPRTHDDISQRSVEEKWMEVAPSFVFDKSRAEEGGMKGNDECVICLEDIKDGEICRVLPECSHVFHKACVGLWLMKKRVCPICRLRVKDTVPNLD* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0493 192 CDD RING-H2_PA-TM-RING 138 181 - -
Vvi6g0493 192 SMART ring_2 139 180 IPR001841 -
Vvi6g0493 192 MobiDBLite consensus disorder prediction 9 25 - -
Vvi6g0493 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 187 IPR013083 -
Vvi6g0493 192 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Vvi6g0493 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 186 - -
Vvi6g0493 192 MobiDBLite consensus disorder prediction 1 25 - -
Vvi6g0493 192 SUPERFAMILY RING/U-box 138 186 - -
Vvi6g0493 192 Pfam Ring finger domain 137 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0493 Vvi-Chr6 5669875 5670453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0493 103 184 C3H Transcription Factor Family AT4G30370 43.902 1.80e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0493 - K10664 vvi:104879547 362.073