Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0492 ATGGATGTCCCGGCTTCTCAACCCTTTCCATCACTCCCATCTCTCCCTCACCCTTTCCCTCCTTTTCTTCCCACCGATCATTCGATGGTTTTTCGCATCTTGAATATGTCCGCTATCCCACTCATCGTCTTCCTGGTCCTCATCTGTGCTTGCATCACCAGAATATTCAGAATTGGATACAATGATCATGAAACTGCTGCAGATGCTCCAGATACTGATCACTATCGTGATCTTCTTTTTCAGCTCCGTTCCCATCACTCTGAAAGATTACGCGAGCTTATGCAAGGAATAAAAGAGCTGGTGATGGAAGCATCAGATGGTTTTGTGTATGATCAAACTAAGGGCATTAAAGGCTGTGAAAGTGGAGAAAAGTCCAGCAGTATTAATACTGGATGTGTCATCTGCTTGGAAGACTTCAAAGATGGAGACGTATGTAGGGCTCTTCCCGAATGCCACCATGTCTTCCATAAAGAATGCGTAGTCTCATGGCTGATGCAGAGCAATTCCTGCCCTATCTGCCGTGCCTTCACTGCCGTCTTTGTCCGAAGGCTGCCTGTGTGA 561 0.4652 MDVPASQPFPSLPSLPHPFPPFLPTDHSMVFRILNMSAIPLIVFLVLICACITRIFRIGYNDHETAADAPDTDHYRDLLFQLRSHHSERLRELMQGIKELVMEASDGFVYDQTKGIKGCESGEKSSSINTGCVICLEDFKDGDVCRALPECHHVFHKECVVSWLMQSNSCPICRAFTAVFVRRLPV* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0492 186 SMART ring_2 132 173 IPR001841 -
Vvi6g0492 186 CDD RING-H2_EL5-like 132 174 - -
Vvi6g0492 186 Pfam Ring finger domain 132 174 IPR001841 -
Vvi6g0492 186 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Vvi6g0492 186 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 40 177 IPR045899 -
Vvi6g0492 186 SUPERFAMILY RING/U-box 131 178 - -
Vvi6g0492 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 178 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0492 Vvi-Chr6 5668234 5668794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0492 103 175 C3H Transcription Factor Family AT2G18670 41.333 1.45e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0492 - K10664 vvi:104879618 359.377