Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0482 ATGGGAAAGCCATTGAGGCGCCAAGACAGTGATGTTGGGGTTGAGGAGAATCATCCAGGCTGCATATGGGGCATATTTCATATTCTTGACTACCACCATTGGCATACCGTCAAGAAGATCCTTCCACACAAATGGCACCGTGGCAGAAGACATGCTAGATGTGATAAAAATCTACGAGAACATTTGATTGACAGTGGCACTGGCACTGGCAAAGCACAAGACTGCATGGATGATGAAGCAGACCAGTCTGTTGTGAAACAGAGTACTACAGAAACTAACCAAGCGAACAAAAGGTCTGGCAAAGCCCGCGGTAAAGAGACAGGGAAGAAAGGGGGTCCAATACATCGTGTTTTGCGCTTCCCTGGACAACCTCGGTTGTGGCAAACTGTTTCAATCCATCATCTAGAACCTTCAGATCCTCGGCTTGGTGAAAGAAGCACTGCTGCTGCTGTATTGCCGGATCCACCTATTCTAAAAGCCTCCGAGGAGCTAGCTGCCGGGAATTTTGTGGACTACTTGGGGCATACCCGGGATGCTAAGAAGCATGGGATATTTCATAAGAGAAGTGAGAAAGCAAGGAAAGCTTCAGTGTATCAGAATATCATGGATTCTGACCAGCTCAACAGAGATATTTCAGGTCATCAGCTAAAGGAATGTGTGGATGTCTTGGAGCTATTACGCATAAACAAGGAGTTATTTGTGAAGATTCTACAAGACCCAGATGTCGGCATTGCAAATCGTTTTCATAGCCTGCAGACCTCCAATTCCCAAATAAAATTAACCAAATCAGGGTCATTTCCTACAGCTGATTTGGCCCGCCGGAGAAATTTCAAGCCTAGTAAATTCGAACACAAGCAGAATGAAATTTGGTCCTTCCCAAAGAGAGAAAAACTGCTTCCTAGTGCTCAAGCACCAAAGTTGGTAGCATCCAAGTCTTCAAAGGATGTCCGTGTGGCTGATGATTTTATAGGCAGTGCTCCAGAACAAGAAAAAAGTTTGGTGAAGAACCAAGAGGATGTAAATCATTTGGCAGATACTAAGCAGAGAACAGAAAATGCTACCGAAGAGAGCACAAAGGTGAGTAACCTCCTCGTCCATGGAAGCTTGTCCACAGATGAGAACGAGGTGGCTGAATGGAGAAGGGAGAGTACAATAGGCCAAGATGGTGTAGACAAGCCCAGGGATGACAGTGCAACTGATATCCCTGGCTATGAACACAGCAAGGGTGGAGTCTACAGCAGAAGAACATCTTTTCCAAATGACTCATTGGACAGATATGCTCAGTTGTTTGAGCATGGTTTCAGGAGAGAGGGCAGGTGGCATCACTCTAAGAGCTTAAAAGTGACAAATGAGAATGATTTTCCATCAGGGGGGCATGGTCGGAAAACAGCCAGAAGGAATCTGTCTCTGCCTGAGTTCAATTTTTATTGTGCACAACCAAATGAGTTGTCTTCTGATGCCCTTTGTTCAGGGAAACCAAGTAGGACTTCTTTGGATAGCACTACAAATATCACAAGAGAGAGTCACAATGAACCAAAACCTGTAGACTTTCCTTCAAGTACAGAGGAATGTGTAGCATTAGAAGCTGTTATAGGCACTGAATTTCAAAAAGACTTGGTAGATGAAAGTGACAGTTATAATCCAAGTATTGAGTATCCGGCTGGGTCTTCAGTAGATTTAGATTACCAGAATGGGTTTAGTGAGAATGCAGATGAGCTACATATGGAGAAGAGCTATGGACAGGAAAATATTTTACTCACAGATGCTGTTGCTGCAGAGACTGAAGATAGCAAAAAGATTGTACAAGGAAGTGATAGTGGTCCAAGTGTTGAATGCCCCGCTGGATTAATGGTAGGCATAAATGATGACGGTGGGCTTAGTGAGGACATGTTTGAGCCAATAATGACGGAAAACAGCCTTAGCCAAGAACAGGAGGTGGATCTTGAGAAGAATTCCAACACCGAGCTTGCACAACCAAGTCCAGATTCTGTTCTTGAGTCCTGTTTCCAAGATGTCATAACTACCCCAGCAAAGTCGACATTTTCAGAAGAGTTGAAACCAAGGCGCATTGATTTTGACGAGTCGGATACTTTGATCAACTCAGAGGGCAGGTCCAGCACAGATGAATTGTCACACGTTTATGTCACAATAAACCATGAGAAAGTTAAAAATGGAAACAAGGGTGCCTACAATCACTTCCTGGATGATGAACCGGTTAAAAAGGATGAAGCAGAGTTCAATTATGTGAGGGACGTCCTTGAGCTATCAGGCTTCACTGGGAAGGAGTACCTAGAAGCATGGCACTTGTTAGACCAGCCATTGAGCCCCTCAGTGTTCGAGGAAATGGAGGCCTGCTTGCCCCACGAAAACCAATGCTCCAAGGAGGAGGTCGGTCCAAGCTGTGATCACCAGCTTCTGTTTGACTTGGTTAACCAGGCGTTGCTCGAGATCTATCAAAGATCATTCACCTACTGCCCAAGAGCATTGTCATACAGCTGCCGTGTCCATCCAATGCCTGTAGGCCATCATGTTGTTGAGGCGGTCTGGGCAAATATTCGCTGGCGCCTGAGCTCGGGACAGGAGAAGGAGCTGACACTGAACGATGTTGTGGCTGGAGATTTGGCAAAGGATGATGGTTGGATGAATCTCCAGTCGGAAACAGAGTGTTTGGCATTGGAGATGGAGGATATGATTTTCCATGAACTCTTGGATGAAATGCTTTGTTGTTGA 2730 0.452 MGKPLRRQDSDVGVEENHPGCIWGIFHILDYHHWHTVKKILPHKWHRGRRHARCDKNLREHLIDSGTGTGKAQDCMDDEADQSVVKQSTTETNQANKRSGKARGKETGKKGGPIHRVLRFPGQPRLWQTVSIHHLEPSDPRLGERSTAAAVLPDPPILKASEELAAGNFVDYLGHTRDAKKHGIFHKRSEKARKASVYQNIMDSDQLNRDISGHQLKECVDVLELLRINKELFVKILQDPDVGIANRFHSLQTSNSQIKLTKSGSFPTADLARRRNFKPSKFEHKQNEIWSFPKREKLLPSAQAPKLVASKSSKDVRVADDFIGSAPEQEKSLVKNQEDVNHLADTKQRTENATEESTKVSNLLVHGSLSTDENEVAEWRRESTIGQDGVDKPRDDSATDIPGYEHSKGGVYSRRTSFPNDSLDRYAQLFEHGFRREGRWHHSKSLKVTNENDFPSGGHGRKTARRNLSLPEFNFYCAQPNELSSDALCSGKPSRTSLDSTTNITRESHNEPKPVDFPSSTEECVALEAVIGTEFQKDLVDESDSYNPSIEYPAGSSVDLDYQNGFSENADELHMEKSYGQENILLTDAVAAETEDSKKIVQGSDSGPSVECPAGLMVGINDDGGLSEDMFEPIMTENSLSQEQEVDLEKNSNTELAQPSPDSVLESCFQDVITTPAKSTFSEELKPRRIDFDESDTLINSEGRSSTDELSHVYVTINHEKVKNGNKGAYNHFLDDEPVKKDEAEFNYVRDVLELSGFTGKEYLEAWHLLDQPLSPSVFEEMEACLPHENQCSKEEVGPSCDHQLLFDLVNQALLEIYQRSFTYCPRALSYSCRVHPMPVGHHVVEAVWANIRWRLSSGQEKELTLNDVVAGDLAKDDGWMNLQSETECLALEMEDMIFHELLDEMLCC* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0482 909 MobiDBLite consensus disorder prediction 385 415 - -
Vvi6g0482 909 MobiDBLite consensus disorder prediction 63 116 - -
Vvi6g0482 909 MobiDBLite consensus disorder prediction 488 508 - -
Vvi6g0482 909 PANTHER PROTEIN TRM32 1 908 IPR044257 -
Vvi6g0482 909 MobiDBLite consensus disorder prediction 488 519 - -
Vvi6g0482 909 Pfam Protein of unknown function (DUF3741) 199 241 IPR022212 -
Vvi6g0482 909 Pfam Domain of unknown function (DUF4378) 745 905 IPR025486 -
Vvi6g0482 909 MobiDBLite consensus disorder prediction 385 402 - -
Vvi6g0482 909 MobiDBLite consensus disorder prediction 82 97 - -
Vvi6g0482 909 MobiDBLite consensus disorder prediction 98 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0482 Vvi-Chr6 5600355 5603592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0482 741 899 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 46.667 1.91e-44 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0482 - - vvi:100853532 1853.95