Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0479 ATGGGTAACGGTTTCGCGAAGCTAAGCATCTGCTTCACCGGCGAGGGAGGAGCTCGCCGGAGGCAGGATATATCTGTTTTGATATCGGACCCTCTTGATGAAGGTTTGGGTCACTCTTTCTGCTACATCAGACCTGACCAGTCTCGGCTCTCATCTTCCAAGGTTCACTCTGAAGAAACCACCACCTTCCGATCAATCTCAGGCGCTTCTGTAAGTGCCAACACATCAACTCCTCTCTCTACAGCCTTTGTAGATCTCTATTCTTACAATAGTATTGATCGAGCCTCGGCTTTCGAGAGCTCAACGTCGTTTACTTCCATTCCTCTGCAACCAATTCCCCGAAATTGGATGAATTCTGGCCCAATACCGGGAAGTTACGGCGGAATTCCGGGTTCTGGACCCCTTGAGAGAGGGTTTTTATCGGGGCCGATTGAGAGAGGGTTCATGTCAGGACCGATTGATCGGGGGTTGTTTTCAGGTCCTCTTGAAAAGAGCAGTACTGATCAGTTTCAGAGGAGTTATTCTCATGGTGGGTTTGCTTTTAGACCCAGATCGAGGAAAGGGTCACTGATTCGTGTTCTTCAGAGAGCAATATCTAAGACGATATCGCGTGGCCAGAACTCGATTGTGGCTCCAATTAAAGGCGTTGTTTCGGTAAAAGAACCGGATTGGCTTGTTGGGTCGGAAAAGCACAATGAGAATCTCACTGTGAGTAGTGTGAATTTGAGCAGTGATGGGAGTTTGGAGGATGATGATTCGCTAGAGAGTCAGAATCTTCAATGGGCTCAAGGGAAAGCAGGGGAGGATCGAGTTCATGTCGTGGTTTCGGAGGAGCATGGCTGGGTTTTTGTAGGGATTTATGATGGATTCAACGGCCCTGATGCACCTGATTATTTATTATCCAATTTATACTCTGCTGTTCACAAGGAGCTCAAGGGTTTGTTATGGGATGACAAGCATGAATCCAATCCAGTTGCAGCCCCTGCCTCCTCCCCTGTTCCTTCAGAAGCTTCCAATTCAGAACTGGAAGATTCACATCTTGGTTCTGATGTTGATTTAGCTAGAAATAGGATGGTGGATGGTTGTTCTCATTGTTCTTATCAAGAGTATTATCCATCGGGGAGTGGGGATGTGAAGTTCGATTCAAATTCAAAGAGAAAGAAGGGTAAGAATTCGAAGAACAAGTACAAGGGTGCAGCAAAGAAATGGGAGGAGAATCAGAGGAGGTGGAAGTGTGAGTGGGACAGGGAGAGATTAGAGCTCGATCGAAGGTTAAAGGAGCAATTGAATGGATCTAATACCGATGGCTCGAGATCTATTAACCATTCAGATGTATTGAAAGCTCTGTCTCAAGCCTTGAGAAAAACAGAGGAGTCGTATTTGGAAATAGCTGATAAGATGGTTATGGAAAATCCGGAGCTGGCCCTCATGGGATCTTGTGTTCTTGTAATGCTGATGAAGGGGGAGGATGTTTATGTGATGAATGTGGGTGATAGTCGAGCAGTTTTAGCTCAGAAGGCGGAGGCTGATGTCTGGCTTGGGAAGATCCGGCAGGACTTGGAAAGGATCAATGAAGAAACATTGCATGATCTTGAAGCGATGGACAATGATAACTCCAACATGATTCCTACTTTATCTGCTTTTCAGCTTACTGTGGACCACAGCACCAGTGTGGAGGAGGAAGTTCGGAGAATAAAAAATGAACACCCTGATGATGCTTGTGCAGTGATGAATGATCGTGTGAAAGGTTCATTGAAAGTCACTCGAGCTTTTGGGGCGGGTTTTCTCAAACAGCCTAAATGGAACAATGCACTTCTAGAGATGTTCAGAATAGACTATGTTGGCACCTCTCCATACATCAGCTGTCTCCCATCTCTTTACCACCACAGATTAGGCCCAGAAGATAGGTTTTTGATATTATCATCTGATGGTTTATATCAATACTTGACAAATGAAGAGGCTGTTTCTGAAGTTGAACTTTTCATCGCATTATCCCCTGATGGAGATCCTGCACAGCATCTGGTCGAGGAAGTGCTGTTTCGTGCAGCAAAAAAAGCTGGTATGGACTTCCATGAGCTGCTTGAAATACCACAAGGGGATAGACGACGGTACCATGATGATGTTTCGATTATTGTTATTTCATTGGAGGGCATGATATGGAGATCATGTGTATAA 2175 0.4533 MGNGFAKLSICFTGEGGARRRQDISVLISDPLDEGLGHSFCYIRPDQSRLSSSKVHSEETTTFRSISGASVSANTSTPLSTAFVDLYSYNSIDRASAFESSTSFTSIPLQPIPRNWMNSGPIPGSYGGIPGSGPLERGFLSGPIERGFMSGPIDRGLFSGPLEKSSTDQFQRSYSHGGFAFRPRSRKGSLIRVLQRAISKTISRGQNSIVAPIKGVVSVKEPDWLVGSEKHNENLTVSSVNLSSDGSLEDDDSLESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSAVHKELKGLLWDDKHESNPVAAPASSPVPSEASNSELEDSHLGSDVDLARNRMVDGCSHCSYQEYYPSGSGDVKFDSNSKRKKGKNSKNKYKGAAKKWEENQRRWKCEWDRERLELDRRLKEQLNGSNTDGSRSINHSDVLKALSQALRKTEESYLEIADKMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEADVWLGKIRQDLERINEETLHDLEAMDNDNSNMIPTLSAFQLTVDHSTSVEEEVRRIKNEHPDDACAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGTSPYISCLPSLYHHRLGPEDRFLILSSDGLYQYLTNEEAVSEVELFIALSPDGDPAQHLVEEVLFRAAKKAGMDFHELLEIPQGDRRRYHDDVSIIVISLEGMIWRSCV* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0479 724 CDD PP2Cc 421 715 IPR001932 -
Vvi6g0479 724 MobiDBLite consensus disorder prediction 378 400 - -
Vvi6g0479 724 Coils Coil 517 537 - -
Vvi6g0479 724 Pfam Protein phosphatase 2C 434 666 IPR001932 -
Vvi6g0479 724 MobiDBLite consensus disorder prediction 322 346 - -
Vvi6g0479 724 PANTHER PROTEIN PHOSPHATASE 2C 249 713 IPR015655 GO:0004722|GO:0006470
Vvi6g0479 724 MobiDBLite consensus disorder prediction 328 342 - -
Vvi6g0479 724 SMART PP2C_4 252 713 IPR001932 -
Vvi6g0479 724 ProSiteProfiles PPM-type phosphatase domain profile. 251 715 IPR001932 -
Vvi6g0479 724 SUPERFAMILY PP2C-like 265 716 IPR036457 -
Vvi6g0479 724 Gene3D - 229 719 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0479 Vvi-Chr6 5571089 5573899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0479 1 724 PP2C-type Phosphatase Gene Family AT1G07630 68.742 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0479 - - vvi:100256990 1367.44