Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0477 ATGGAGCTGCTCCAACCCTCACACCCCCCAGGCCCTCCTGGAGATCGCTTTTCTGGGTTTTCACCGCCGGCGAGTTTCCTACATGGGTTTGATCAGGGTAGTCCAGCGGTAGCTTCTTCGTTGTCGGGGATTGTCGAAGAAGGTGGTGACAGAGTACACGTGGCCGTCGGGAAATCAGTCGAGAAAGCTGAAAGTTTGCTTCACTGGACTTTCCGGCGATTTGGGAGCTGTGAAATTTGTCTTGTTCATGTGCATCAACCTTCTCCGCTGATTCCCACCCTCTTGGGGAAACTACCGGCAAGTCAAGCAAATGGGGAAGTGGTGTCTGCACATAGAAGAGAGGAGAAGAAACAAACAAATAAACTTCTACTTAACTACTCGAACATTTGCTCCAGGATGAAGGTGAAACCAAGCATCATTACAATTGAAGCTGATCATGTTCAGAAAGGAATTGTAGATCTGGTGAACAGACATGGTATTAGGAAGCTGGTTATGGGGGGCACTGTGCCAGAAAATTGCATGAAGGTGAAAATGAGCTCTAGCAAAGCAAATTATGCTGCAAAAAAGGCTCCTGAATTCTGTGAGATCTGGTTTATCCACAAAGGAAAACATGTATGGACAAAAGAAGCGTTCAAAGCCCCAGGCTTTCTGCCACCAATTAGTCATCCAAAGACAGAAACTGGAGAAGACTTAGGTTTCCAACCAGAATGTCTTCCATCCGGTTCTTCTCCTGTAAGTGTGCTTAGTGGTGGAGATAGAAATGGAGTTGAGAGCGAATTGGTTAGAACCAGAGTGACATCATCACCAGCCTTATCTGATTCTACTAGTCGAAATGACCCACAGTTTAGTCCAACAAGCTCTAGCACCTTTTCTGGATATGGTTCCTCTGCAGAAAAAAGGTCTATGGATTCCTACTCAAAGACAGAGGAAGAAAGTTTATATTATCAGCTTGCAGAAGCTACAATTGAAGCAGAGGCCTCAAGGAACGAAGCATTTTTAGAGCTATTGAAGCGCCAAAAATTGGAATCAGAAGCTATGGAAGCTATTGCCAAGGTCAAAGCTTTTGAATCTGCTCATGCACGTGAAGTTGAACTTAGGAAAGATGCTGAAGATGCATTGAGAAGTACGATACAGGAACAAGACAAGCTCTTGGAAGAAAGAGAAAAACTAACCAGGGAGATACAGAAGACCATGAGAAATGTAGCCCTTCTAGACAGTCGTGCACAGGAAGCAAACCGGCGATGTGATGAAGCAACTGAGGAATTAAAACTCATCCAAGCATCCATTGCAACTCTCCAGTATGAAAAGCAGAAGATCCGACGGCAAAAAATGGAAGCCATGCATTGGCTTGATCGGTGGAGAAGTCGTGGTCAAGCTGGAACTTCACACTGCAATGGATTCATTGGGGTTTTTGAAGATTTGCCTGAGTTAGCAGAATTTTCACTGTCGGATCTGGAGACTGCGACATGCAATTTTTCCGAGAGTTTCAAGATTGGGCAAGGAGGAAATGGTTCTGTTTACAAAGGGGAAATGTTAGATAAAACTGTTGCTATTAAGAAGCTGCATCCCCATAACATGCAGGGACAATCAGAGTTTCAAAGAGAGGTTCAAGTTCTTGGCAAAATCCAACATCCTCATCTGGTGACTCTGATTGGTGCAAGCCCAGAAGCATGGTCACTAGTATATGAGTATTTGCCCAATGGGAGCCTCCAAGATCGCCTTTTTCGGAAGAGCAACAACTCTCCCCTAACATGGAAGGTCCGAGCACGGATCATCACTGAAATATCGAGTGCCCTTCTCTTCTTGCACTCTTGCAAACCTGAAAAGATAGTCCATGGCAATCTGAGACCTGAGAACATCCTTCTTGGTTCTGATCTTCGCTGCAAGATATGTGATTTTGGAATTTGTAGACTTGTCTCTGATGAAACCCTTCGTTGTCCAAGTTTCCGCCGCAATGCTGAGCCAAAGGGTGCTTTTCCATATGAGGATCCAGAGTTGTATAGGACTGGAGTCCTGACAACCAAGTCTGACATTTACTCCTTTGGAGTAATCATTCTACAGTTACTCACTGGAAGGCCTCCTGTGGGTTTGGCCAGTGAGGTGCGCAAGGCAGTTTCATGTGGGAAATTAGCATCAATTTTGGATTCTTCAGCTGGAGTATGGCCTACACATGTGGCAAGCAGATTGGCGGACCTGGCACTGAGATGCTGTGAATTGAACAGTAGGGACAGACCAGAGCTAAAACCAACTCTGGTTAGGGAACTGGAGCAGTTGCATGTTTCAGAAGAGCAACCAGTTCCATCTTTCTTTTTGTGCCCTATCCTTCAGGACATAATGCACGATCCTCATGTGGCAGCAGATGGCTTCACTTATGAAAAAGAAGCCTTGCTTGGGTGGTTGGAAAATGGCCGGGAAACCTCTCCAATGACCAATTTGAGATTGAGTCACTTGCATCTTACTCCCAACCATTCACTGAGATCTACAATTCAAGACTGGCTTTGCAAATCATGA 2511 0.452 MELLQPSHPPGPPGDRFSGFSPPASFLHGFDQGSPAVASSLSGIVEEGGDRVHVAVGKSVEKAESLLHWTFRRFGSCEICLVHVHQPSPLIPTLLGKLPASQANGEVVSAHRREEKKQTNKLLLNYSNICSRMKVKPSIITIEADHVQKGIVDLVNRHGIRKLVMGGTVPENCMKVKMSSSKANYAAKKAPEFCEIWFIHKGKHVWTKEAFKAPGFLPPISHPKTETGEDLGFQPECLPSGSSPVSVLSGGDRNGVESELVRTRVTSSPALSDSTSRNDPQFSPTSSSTFSGYGSSAEKRSMDSYSKTEEESLYYQLAEATIEAEASRNEAFLELLKRQKLESEAMEAIAKVKAFESAHAREVELRKDAEDALRSTIQEQDKLLEEREKLTREIQKTMRNVALLDSRAQEANRRCDEATEELKLIQASIATLQYEKQKIRRQKMEAMHWLDRWRSRGQAGTSHCNGFIGVFEDLPELAEFSLSDLETATCNFSESFKIGQGGNGSVYKGEMLDKTVAIKKLHPHNMQGQSEFQREVQVLGKIQHPHLVTLIGASPEAWSLVYEYLPNGSLQDRLFRKSNNSPLTWKVRARIITEISSALLFLHSCKPEKIVHGNLRPENILLGSDLRCKICDFGICRLVSDETLRCPSFRRNAEPKGAFPYEDPELYRTGVLTTKSDIYSFGVIILQLLTGRPPVGLASEVRKAVSCGKLASILDSSAGVWPTHVASRLADLALRCCELNSRDRPELKPTLVRELEQLHVSEEQPVPSFFLCPILQDIMHDPHVAADGFTYEKEALLGWLENGRETSPMTNLRLSHLHLTPNHSLRSTIQDWLCKS* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0477 836 ProSiteProfiles Protein kinase domain profile. 492 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0477 836 Gene3D HUPs 47 169 IPR014729 -
Vvi6g0477 836 Coils Coil 338 358 - -
Vvi6g0477 836 MobiDBLite consensus disorder prediction 1 20 - -
Vvi6g0477 836 CDD RING-Ubox_WDSUB1-like 767 822 - -
Vvi6g0477 836 Gene3D Transferase(Phosphotransferase) domain 1 565 762 - -
Vvi6g0477 836 SUPERFAMILY RING/U-box 763 835 - -
Vvi6g0477 836 MobiDBLite consensus disorder prediction 260 301 - -
Vvi6g0477 836 Gene3D Phosphorylase Kinase; domain 1 470 564 - -
Vvi6g0477 836 Pfam Protein tyrosine and serine/threonine kinase 497 748 IPR001245 GO:0004672|GO:0006468
Vvi6g0477 836 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 59 167 - -
Vvi6g0477 836 PANTHER OS02G0152300 PROTEIN 52 830 - -
Vvi6g0477 836 SUPERFAMILY Protein kinase-like (PK-like) 476 755 IPR011009 -
Vvi6g0477 836 MobiDBLite consensus disorder prediction 1 17 - -
Vvi6g0477 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 765 836 IPR013083 -
Vvi6g0477 836 CDD STK_N 52 202 - -
Vvi6g0477 836 ProSiteProfiles U-box domain profile. 765 836 IPR003613 GO:0004842|GO:0016567
Vvi6g0477 836 Coils Coil 366 435 - -
Vvi6g0477 836 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Vvi6g0477 836 SMART Ubox_2 769 832 IPR003613 GO:0004842|GO:0016567
Vvi6g0477 836 MobiDBLite consensus disorder prediction 241 305 - -
Vvi6g0477 836 Pfam U-box domain 766 835 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0477 Vvi-Chr6 5555741 5563891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0477 50 833 U-box Gene Family AT2G45910 38.113 2.02e-179 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi6g0477 PK_Tyr_Ser-Thr 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0477 - - vvi:100262227 1645.94