Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0471 ATGGAAGAAGCAAAAGGAGCTCCAGTACAGGAGCTGATCGATACAGTTAGTAAGATATCGTCAATCTCAGATTACAGATGTACGGTCAGGAAAGAGTATTGTAATCTGGCAAGAAGGTTGAAGCTGTTGATTCCAATGTTTGAAGAGATTCGGGACAGTAAAGAGCCGATTCCAGAGGAGTCGTTGAAAGCCCTAGTCTCGTTGAAGGAGGCTCTGGAGTCAGCTAAAGAGTTGCTCAGATTTGGTAGTGAAGGGAGCAAGATTTTCATGGTCCTAGAAAGAGAGCAAGTTGTCTCCAAATTCCACGAAGTGACTGCTAATCTGGAACAAGCTTTGAGCGGAATCTCATTTGAAAAACTTGACATAACAGACGAAGTTAAGGAACAGGTTGAGCTAGTTCTCTCTCAGTTCAGAAGAGCCAAAGGAAGGGCTGATGCAACTGATGCTGAGCTGTATGAGGATCTTGTGTCCCTTTATAACAAGAGCACTGATGCAGCTACAGACCCAGCTGTCTTAAGGAGGTTGGCTGAGAAGTTGCAATTAATGCAAATAGATGATCTCACACAAGAATCACTGGCTCTGCATGAAATGGTCACTGCCAGCAGTGCAGATCCTGGAGAGAGCATCGAGAAGATGTCAATGCTATTGAAGAAAATTAAGGATTTTGTGCAGACTGAAAATCCAGACTTGACTGCTACACATGGAAAGTCCCTTCCTTCAAGTTGCAGCGGGCAAATATCTACCGATGGGAATCACAAGTCCCCAGTTATTCCAGATGATTTTCGTTGTCCGATATCCCTGGAGCTAATGAACGATCCTGTCATTGTTTCAACAGGGCAGACCTATGAACGTTCCTGCATCGAGAAATGGCTGGAAGCAGGACATGGCACATGTCCAAAGACACAACAGACCCTCTCTAGCCAGGCCCTCACACCAAACTATGTCTTGCGTAGCCTCATAGCACAGTGGTGCGAGTCTAATGGGATCGAGCCACCAAAAAGACCCAGCAGTTCTCGGCCCAGTAAAACTGCATCTTCCTGCTCACCAGCTGAGCGCACCAACATAGAAATTCTTCTCAACAAGCTTCGATCTGGCAGCCCTGAAGACCAGCGAAATGCAGCAGGTGAGATCCGCCTTCTTGCTAAGCGCAATGCAGATAATCGAGTGGCCATTGCCGAAGCGGGGGCCATCCCTCTCCTGGTCAACCTCCTTGCAACACCTGATTCCCGCACCCAAGAGCATGCTGTCACAGCGCTTCTTAACCTTTCCATATGTGAAGATAACAAATCAAGCATTATTAACTCTGGAGCTGTACCTGGTATAGTTTATGTGCTCAAGAGGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCTACCCTCTTTAGCCTTTCGGTGGTGGATGAGAATAAGGTTACAATTGGTGCTTCAGGGGCAATCCCACCACTGGTGACATTGTTAAGTGAAGGTACCCAGAGGGGGAAGAAGGATGCTGCAACCGCACTGTTCAACTTGTGTATTTACCAAGGGAACAAGGGAAAGGCAGTGAGAGCTGGAGTAGTGCCCACACTGATGCGGCTGCTGACAGAACCTGGAGGTGGAATGGTGGATGAGGCACTGGCTATACTTGCAATCTTAGCCAGCCATCCTGAAGGGAAGGCAGCCATTGGATCCTCCGAGGCAGTGCCAGTTTTGGTGGAGGTTATTGGCAACGGGTCCCCCAGGAACAGAGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGTGCTGGTGACCAACATCATCTAGCGGAAGCTCAGGAGCTTGGAGTGATGGGTCCATTGGTGGATCTGGCTCAAAATGGCACCGATAGGGGCAAGCGAAAGGCTGCACAGTTGCTTGAGCGCATGGGCAGGTTTATTGAACAGCAGCAGCAACAGCAGGCTCTGGTGCAAGCTCAGGCTCAAGCTCAGGCTCAGGCTCAGGCTCAGGCCCAGCCCCAGGCACATACCCACACCCACACAGAGAGCCCGCACACACAGCTGTCCACGCTAATGAATGCTGTTGATGGCTGA 2049 0.4939 MEEAKGAPVQELIDTVSKISSISDYRCTVRKEYCNLARRLKLLIPMFEEIRDSKEPIPEESLKALVSLKEALESAKELLRFGSEGSKIFMVLEREQVVSKFHEVTANLEQALSGISFEKLDITDEVKEQVELVLSQFRRAKGRADATDAELYEDLVSLYNKSTDAATDPAVLRRLAEKLQLMQIDDLTQESLALHEMVTASSADPGESIEKMSMLLKKIKDFVQTENPDLTATHGKSLPSSCSGQISTDGNHKSPVIPDDFRCPISLELMNDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSQALTPNYVLRSLIAQWCESNGIEPPKRPSSSRPSKTASSCSPAERTNIEILLNKLRSGSPEDQRNAAGEIRLLAKRNADNRVAIAEAGAIPLLVNLLATPDSRTQEHAVTALLNLSICEDNKSSIINSGAVPGIVYVLKRGSMEARENAAATLFSLSVVDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPEGKAAIGSSEAVPVLVEVIGNGSPRNRENAAAVLVHLCAGDQHHLAEAQELGVMGPLVDLAQNGTDRGKRKAAQLLERMGRFIEQQQQQQALVQAQAQAQAQAQAQAQPQAHTHTHTESPHTQLSTLMNAVDG* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0471 682 Gene3D - 429 532 IPR011989 -
Vvi6g0471 682 MobiDBLite consensus disorder prediction 331 350 - -
Vvi6g0471 682 FunFam RING-type E3 ubiquitin transferase 337 431 - -
Vvi6g0471 682 CDD MLKL_NTD 10 138 - -
Vvi6g0471 682 Gene3D - 7 118 IPR036537 GO:0007166
Vvi6g0471 682 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Vvi6g0471 682 Gene3D - 350 428 IPR011989 -
Vvi6g0471 682 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Vvi6g0471 682 FunFam RING-type E3 ubiquitin transferase 257 330 - -
Vvi6g0471 682 PANTHER U BOX DOMAIN-CONTAINING 30 634 - -
Vvi6g0471 682 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Vvi6g0471 682 MobiDBLite consensus disorder prediction 328 350 - -
Vvi6g0471 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Vvi6g0471 682 FunFam RING-type E3 ubiquitin transferase 432 531 - -
Vvi6g0471 682 SMART arm_5 466 506 IPR000225 GO:0005515
Vvi6g0471 682 SMART arm_5 507 547 IPR000225 GO:0005515
Vvi6g0471 682 SMART arm_5 425 465 IPR000225 GO:0005515
Vvi6g0471 682 SMART arm_5 548 588 IPR000225 GO:0005515
Vvi6g0471 682 SMART arm_5 590 630 IPR000225 GO:0005515
Vvi6g0471 682 SMART arm_5 384 424 IPR000225 GO:0005515
Vvi6g0471 682 Pfam U-box domain 257 327 IPR003613 GO:0004842|GO:0016567
Vvi6g0471 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 330 IPR013083 -
Vvi6g0471 682 SUPERFAMILY RING/U-box 252 333 - -
Vvi6g0471 682 Pfam Armadillo/beta-catenin-like repeat 384 423 IPR000225 GO:0005515
Vvi6g0471 682 Pfam Armadillo/beta-catenin-like repeat 467 505 IPR000225 GO:0005515
Vvi6g0471 682 Pfam Armadillo/beta-catenin-like repeat 549 588 IPR000225 GO:0005515
Vvi6g0471 682 MobiDBLite consensus disorder prediction 230 252 - -
Vvi6g0471 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
Vvi6g0471 682 SUPERFAMILY ARM repeat 354 636 IPR016024 -
Vvi6g0471 682 Gene3D - 533 649 IPR011989 -
Vvi6g0471 682 MobiDBLite consensus disorder prediction 652 682 - -
Vvi6g0471 682 MobiDBLite consensus disorder prediction 230 255 - -
Vvi6g0471 682 CDD RING-Ubox_PUB 258 310 IPR045210 -
Vvi6g0471 682 FunFam RING-type E3 ubiquitin transferase 532 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0471 Vvi-Chr6 5498330 5504036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0471 1 671 U-box Gene Family AT3G46510 70.343 0.0 948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0471 - - vvi:100258708 1246.11