Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0466 ATGGAGGGTGACAACGTCGGCGGGGGGGCTCCGGCTAGCTCCAGGTGGAATCCCACGAAGGAGCAGATCAGCATGCTTGAGAGCTTGTACATGCAAGGGATAAGGACGCCGAGCGCAGAGCAGATACAGCAGATAACTGGCAGGCTTAAGGCCTACGGTCATATCGAAGGGAAGAACGTGTTTTACTGGTTTCAGAACCACAAGGCTAGGCAAAGGCAGAAGCAGAAGCAGGAGAATATGGCTTATGTGAACCGCTATCTTCACAAGACTTCCCCTTTGTTCCCTCCTCCATGCCCAAATGTTGTTTGCGGCCCATACTACGTACCACAGAGCGACCTAGGGTTTTACCCCCAGTACCCCAAGGTGCTTTTGCCTGGTGGCATAAGGAGGAGGCCGAGGACAGAGAGAGCTGAGAAGACGAAAACACATGGTGGTGGTGGTGCAGGATACGAAATGATGATGCAGGCAGGCGATAATAACGAGGGGTTGATTCACAGCTCTAGCATTGACTGTAATCAAGAGACGTTGGCTCTGTTCCCACTTCACCCAACTGGCGACTTACAGCGCTCTTCTCATGCTGAAACCTCTGCTGAGAATTCCACTACTCTTTCTACCTCCTCTGAGACAGCCACCACCCCAGGGATCGAAGATGGGTCTTGTGATCAACCCTTCTTTGATTTCTTTTCTGCCCCTTCTAGTGAGACTATTTAA 711 0.5148 MEGDNVGGGAPASSRWNPTKEQISMLESLYMQGIRTPSAEQIQQITGRLKAYGHIEGKNVFYWFQNHKARQRQKQKQENMAYVNRYLHKTSPLFPPPCPNVVCGPYYVPQSDLGFYPQYPKVLLPGGIRRRPRTERAEKTKTHGGGGAGYEMMMQAGDNNEGLIHSSSIDCNQETLALFPLHPTGDLQRSSHAETSAENSTTLSTSSETATTPGIEDGSCDQPFFDFFSAPSSETI* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0466 236 FunFam WUSCHEL-related homeobox 4 13 80 - -
Vvi6g0466 236 MobiDBLite consensus disorder prediction 130 150 - -
Vvi6g0466 236 CDD homeodomain 15 75 IPR001356 GO:0003677
Vvi6g0466 236 MobiDBLite consensus disorder prediction 183 223 - -
Vvi6g0466 236 SUPERFAMILY Homeodomain-like 14 77 IPR009057 -
Vvi6g0466 236 ProSiteProfiles 'Homeobox' domain profile. 9 74 IPR001356 GO:0003677
Vvi6g0466 236 Pfam Homeodomain 13 73 IPR001356 GO:0003677
Vvi6g0466 236 MobiDBLite consensus disorder prediction 188 216 - -
Vvi6g0466 236 SMART HOX_1 11 78 IPR001356 GO:0003677
Vvi6g0466 236 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 208 IPR044555 GO:0003700|GO:0099402
Vvi6g0466 236 Gene3D - 15 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0466 Vvi-Chr6 5441370 5442775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0466 4 235 Wox Gene Family AT5G59340 44.922 2.79e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi6g0466 Homeodomain 1.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0466 - - vvi:100263784 474.937