Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0451 ATGTCTAACGCTTTGGACATGTCTCTCGATGATCTCATCAAGAACAATAAACGATCCGGAGGCGGTGGCAACGCCAGAGGCCGCGGCCGCGGCTCTGGACCTGGCCCTGCCCGTCGTCTCCCCAATCGCGGCGCTAATCGAATCACACCCTATTCCGTGAGCAAGGCGCCGGAGACGACATGGCAGCATGATATGTTTGCAGATCAGGCGGCGGCCTATCCGGCGCAAGCCGGTAGGACTTCGGCCATTGAAACAGGAACGAAGCTTTATATTTCTAACTTGGATTATGGCGTCTCGAATGAGGATATCAAGGAACTTTTTTCAGAGGTTGGTGACCTGAAAAGATATTCAATCCATTATGATCGGAGTGGGAGATCGAAGGGAACGGCAGAGGTTGTCTTCTCCCGACGAGGAGATGCTGTAGCAGCTGTCAAGAGATACAACAATGTTCAGCTTGATGGGAAGCCAATGAAAATAGAAATCGTGGGAACAAATATTGCAACACCTGCTGCTGTGCCTCCTGTTACTAATGGAACTTTTGGAAATTCAAATGGTGGTCTCAGAAGTGCCCAAGGAAGGGTTGGTTCACAGGGACGGCCACGTGGTGGCAGTGGCGGCCGTGGATTTGGAAGGGGGCGTGGACGGGGAAGAGGCCGTGGTGAAAAGGTGTCTGCAGAGGATCTTGATGCTGATTTGGAGAAGTACCACTCTGAAGCAATGCAGATAAACTGA 732 0.5178 MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGPARRLPNRGANRITPYSVSKAPETTWQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAVPPVTNGTFGNSNGGLRSAQGRVGSQGRPRGGSGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQIN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0451 243 Pfam C-terminal duplication domain of Friend of PRMT1 180 238 IPR025715 -
Vvi6g0451 243 SMART FoP_duplication_2 176 243 IPR025715 -
Vvi6g0451 243 FunFam THO complex subunit 4 80 225 - -
Vvi6g0451 243 CDD RRM_THOC4 87 161 - -
Vvi6g0451 243 SUPERFAMILY RNA-binding domain, RBD 28 161 IPR035979 GO:0003676
Vvi6g0451 243 MobiDBLite consensus disorder prediction 177 191 - -
Vvi6g0451 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Vvi6g0451 243 MobiDBLite consensus disorder prediction 214 236 - -
Vvi6g0451 243 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 241 - -
Vvi6g0451 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Vvi6g0451 243 MobiDBLite consensus disorder prediction 1 53 - -
Vvi6g0451 243 SMART rrm1_1 88 160 IPR000504 GO:0003723
Vvi6g0451 243 MobiDBLite consensus disorder prediction 177 243 - -
Vvi6g0451 243 Gene3D - 64 227 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0451 Vvi-Chr6 5316340 5322972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0451 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 2.85e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0451 K12881 - vvi:100257081 392.889