Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0450 ATGTCGGTATCGTCCCGCTTGTCTCCTGGGCAGAGCGATATCCCCACCAACGCCGCCGCACGGGCCAATGAAGTCATCACATGCAAAGCGGCGGTGTGTTGGGGGCTGGGGGAGGCGATGAAGGTGGAGGAGATACAGGTAGAGCCACCCAAATCGTCTGAAGTTCGGGTTAAGATGCTGTACGCTAGTATCTGTCACACAGACATCTTCTACTGCTCAGAACTTTCACTGCCTATGTTTCCCAAAGTTCCAGGACATGAAGGTGTTGGGGTGGTGGAGAGTGTAGGAGAAAATGTAACAGGTTTGAAGGAAGGCGATGTAGTAATTCCGACCTACCTAGGGGAGTGCGGCGAATGCGAAAATTGTAGGTCACCGAAGACCAATGTATGCCTTAAGCACCCTGTAACTTTCACTGGTCTGATGCCCGATGGCACTTCCAGAATGTCTATTAGAGGGCAAAGGCTCCACCACATTTTTAGCTGCTCCACATGGACTGAGTACATGGTTGTGAATGCTAACTACCTTGTCAAGATTGATCCAAGGATAGCTCCCTCAGATGCTAGCTTCCTCTCATGTGGCTTCTCCACTGGATATGGGGCAGCTTGGAAGGACGCCAAGGTTGAAAAAGGATCAAGTGTTGCAGTTCTGGGTCTTGGTGCCGTTGGATTAGGGGTGCTACAGGGGGCCCGAAATCAAGGGGCAGCTAGAATAATTGGCATAGACAAAAATGAAAGAAGGCGTGAAGTGGGAGAGGCTTTTGGAATGACTGATTTTATAAATCCCAATGAATCTAACAAGTCTATCTCAGAACTGGTAAATGAGTTGACGGGAGGACAGGGTGTGGATTATAGCTTTGAATGCACTGGAATTCCGTCTTTGGTTAATGAAGCACTTCAAGCCACCAAAGTGGGAAAAGGGATGTCGATGGTACTTGGTATAGCAAATGTCCCGACCGTGGACATCAGTTTAATGGCTCTCTTGTCTGGTAAAACACTAAAAGGATGCTTCTTCGGAGGGATCAAAGTCCAGTCAGACATTCCCGTAATAGTTGACAAATGCATCAATAAGGCAAGTTCTTTGGATATTCAACTTGATGAACTTTTGACTCATGAAGTTCAATTGGAAGACATGAACAAGGCATTTGAGCTTTTGAAGCAGCCAGACTGTGTGAAGGTTCTCATCAAGATTTGA 1191 0.4719 MSVSSRLSPGQSDIPTNAAARANEVITCKAAVCWGLGEAMKVEEIQVEPPKSSEVRVKMLYASICHTDIFYCSELSLPMFPKVPGHEGVGVVESVGENVTGLKEGDVVIPTYLGECGECENCRSPKTNVCLKHPVTFTGLMPDGTSRMSIRGQRLHHIFSCSTWTEYMVVNANYLVKIDPRIAPSDASFLSCGFSTGYGAAWKDAKVEKGSSVAVLGLGAVGLGVLQGARNQGAARIIGIDKNERRREVGEAFGMTDFINPNESNKSISELVNELTGGQGVDYSFECTGIPSLVNEALQATKVGKGMSMVLGIANVPTVDISLMALLSGKTLKGCFFGGIKVQSDIPVIVDKCINKASSLDIQLDELLTHEVQLEDMNKAFELLKQPDCVKVLIKI* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0450 396 SUPERFAMILY GroES-like 22 208 IPR011032 -
Vvi6g0450 396 Gene3D - 197 335 - -
Vvi6g0450 396 Pfam Alcohol dehydrogenase GroES-like domain 53 178 IPR013154 -
Vvi6g0450 396 SMART PKS_ER_names_mod 35 394 IPR020843 GO:0016491
Vvi6g0450 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 184 354 IPR036291 -
Vvi6g0450 396 CDD liver_alcohol_DH_like 26 395 - -
Vvi6g0450 396 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 85 99 IPR002328 GO:0008270|GO:0016491
Vvi6g0450 396 FunFam alcohol dehydrogenase 1-like isoform X1 36 196 - -
Vvi6g0450 396 Pfam Zinc-binding dehydrogenase 220 342 IPR013149 -
Vvi6g0450 396 Gene3D - 32 391 - -
Vvi6g0450 396 PANTHER ALCOHOL DEHYDROGENASE 24 388 - -
Vvi6g0450 396 FunFam S-(hydroxymethyl)glutathione dehydrogenase 197 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0450 Vvi-Chr6 5308774 5311089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0450 53 388 Monolignol Biosynthesis Gene Families AT2G21730 26.590 9.13e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0450 K00121 - vvi:100250105 734.947