Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0448 ATGAAGATGCACATTCGGAGTATCTTATCCTCCTACTTGACCAGGAAGCCAATCAGTAAAAGCCCCATTTTTAGATCTCTTGGCCAAAACCATTTCTTTACCAGCAGTACCTCCCGGTCCAATCAAGTCATCACTTGCAAGGCGGCGGTGTGTTGGGGAGCAGGGGAGGCGGTGAAGGTGGAGGAGATACAGGTAGAGCCACCCAAATCGTCTGAAGTTCGGGTTAAGATGATGTATGCTAGTATCTGCCACACAGACATCTTATGTTGCTCAGGATTTCCGCTGCCTCTGTTTCCAAAAGTTCCAGGCCATGAAGGTGTTGGCATGATGGAGAGCGTGGGCGAAAATGTGATAGCCTTGAAGGAGGGAGATCTAGTTATTCCAACCTATTTAGGGGAGTGTGGAGAATGTGAAAATTGTAAGTCGGGAAAGACCAATTTATGCCTCGAACACCCCCTAACTCTTAATGGTTTGATGCTTGATGGCACTTCCAGGATGTCTATTAGGGGCCAAAGGCTCTACCACCTTTTTAGCTGCTCCACATGGGCTGAGTATATGGTTGTGAATGCCAACTACCTTGTCAAGATTGACTCAAGAATAGCTCTGTCAGAAGCTAGCTTCCTCTCATGTGGCTTTTCCACTGGATATGGGGCAGCTTGGAAAGCGGCCAAGGTTGAAAAAGGTTCTAGTGTGCTAGAAGGGGCTCGAAACCAAGGGGCGGCTAGAATAATTGGTATAGACAAAAATGAAAGAAGGTGTGAAATGGGAAAGAATTTTGGAATGACTGATTTTATAAATCCAAGTAAATCTAATAAACCTATCTCAGAATTAGTTCGTGAGTTGACAAGAGGAGAGGGTGTGGATTATAGTTTTGAATGCAGTGGAATTCAATCTTTGATTAATGAAGTACTTCAACCCACCAAAGTGGGAAAAGGAATGTTGATAGTAATTGGAGCAGGAAACAACGCGAGCATGGACATTAATTTCTTGACCCTCTTGCTTGGAAGAACAATAAAAGGATGCATCTTTGGAGGGATCAAAGTCCAGTCTGACATCCCCTTACTAGTTAACAAATGCATCAATAAGGTGATAGAGGGGGCACAAAACCAAGGGGCGGCTAGAATACATAGACAAAAGTGA 1140 0.443 MKMHIRSILSSYLTRKPISKSPIFRSLGQNHFFTSSTSRSNQVITCKAAVCWGAGEAVKVEEIQVEPPKSSEVRVKMMYASICHTDILCCSGFPLPLFPKVPGHEGVGMMESVGENVIALKEGDLVIPTYLGECGECENCKSGKTNLCLEHPLTLNGLMLDGTSRMSIRGQRLYHLFSCSTWAEYMVVNANYLVKIDSRIALSEASFLSCGFSTGYGAAWKAAKVEKGSSVLEGARNQGAARIIGIDKNERRCEMGKNFGMTDFINPSKSNKPISELVRELTRGEGVDYSFECSGIQSLINEVLQPTKVGKGMLIVIGAGNNASMDINFLTLLLGRTIKGCIFGGIKVQSDIPLLVNKCINKVIEGAQNQGAARIHRQK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0448 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 359 IPR036291 -
Vvi6g0448 379 FunFam alcohol dehydrogenase 1-like isoform X1 54 214 - -
Vvi6g0448 379 SUPERFAMILY GroES-like 41 226 IPR011032 -
Vvi6g0448 379 Gene3D - 215 341 - -
Vvi6g0448 379 Pfam Alcohol dehydrogenase GroES-like domain 71 196 IPR013154 -
Vvi6g0448 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 215 341 - -
Vvi6g0448 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 103 117 IPR002328 GO:0008270|GO:0016491
Vvi6g0448 379 Gene3D - 50 362 - -
Vvi6g0448 379 Pfam Zinc-binding dehydrogenase 228 351 IPR013149 -
Vvi6g0448 379 PANTHER ALCOHOL DEHYDROGENASE 42 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0448 Vvi-Chr6 5282932 5294571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0448 72 210 Monolignol Biosynthesis Gene Families AT4G37970 31.915 6.34e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0448 K00121 - vvi:100250105 535.413