Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0443 ATGTTTATTGTTTCAATGATGAAAACGGCGGGAAATCTGTTGAAGCCATGGTTTTCTGCTAGAAGATTCAGCTCTGAGATCTTTGTCACCAGATTATCAGGTTACACCACAAATGAAGAATTGATAGAGATGTTTTCACCGTTTGGTGTAGTCACACAAGCTAGGTTAATTAAAGACCCAAAAACCCAAAGGCCAAAAGGGTTTGGTTTTGTAAAATTTGAGTCAGAGGTTGATGCAGAGAAGGCATTGAAGGCCATGAATGGCAGGATTGTAAGAGGAAGGCTGATTTTTGTGGAAATCGCAAAGACTACAAGACCGGGAGAGGATGCTACCTGCTGA 339 0.413 MFIVSMMKTAGNLLKPWFSARRFSSEIFVTRLSGYTTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFESEVDAEKALKAMNGRIVRGRLIFVEIAKTTRPGEDATC* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0443 112 SMART rrm1_1 26 99 IPR000504 GO:0003723
Vvi6g0443 112 CDD RRM_SF 27 99 - -
Vvi6g0443 112 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 20 106 - -
Vvi6g0443 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Vvi6g0443 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 96 IPR000504 GO:0003723
Vvi6g0443 112 SUPERFAMILY RNA-binding domain, RBD 26 106 IPR035979 GO:0003676
Vvi6g0443 112 Gene3D - 12 110 IPR012677 -
Vvi6g0443 112 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 26 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0443 Vvi-Chr6 5219537 5221627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0443 20 99 Eukaryotic Initiation Factors Gene Family AT5G06000 38.750 1.99e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0443 K13195 - vvi:100263981 223.787