Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g0443 | ATGTTTATTGTTTCAATGATGAAAACGGCGGGAAATCTGTTGAAGCCATGGTTTTCTGCTAGAAGATTCAGCTCTGAGATCTTTGTCACCAGATTATCAGGTTACACCACAAATGAAGAATTGATAGAGATGTTTTCACCGTTTGGTGTAGTCACACAAGCTAGGTTAATTAAAGACCCAAAAACCCAAAGGCCAAAAGGGTTTGGTTTTGTAAAATTTGAGTCAGAGGTTGATGCAGAGAAGGCATTGAAGGCCATGAATGGCAGGATTGTAAGAGGAAGGCTGATTTTTGTGGAAATCGCAAAGACTACAAGACCGGGAGAGGATGCTACCTGCTGA | 339 | 0.413 | MFIVSMMKTAGNLLKPWFSARRFSSEIFVTRLSGYTTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFESEVDAEKALKAMNGRIVRGRLIFVEIAKTTRPGEDATC* | 113 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g0443 | 112 | SMART | rrm1_1 | 26 | 99 | IPR000504 | GO:0003723 | |
Vvi6g0443 | 112 | CDD | RRM_SF | 27 | 99 | - | - | |
Vvi6g0443 | 112 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 20 | 106 | - | - | |
Vvi6g0443 | 112 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 103 | IPR000504 | GO:0003723 | |
Vvi6g0443 | 112 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 27 | 96 | IPR000504 | GO:0003723 | |
Vvi6g0443 | 112 | SUPERFAMILY | RNA-binding domain, RBD | 26 | 106 | IPR035979 | GO:0003676 | |
Vvi6g0443 | 112 | Gene3D | - | 12 | 110 | IPR012677 | - | |
Vvi6g0443 | 112 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 26 | 103 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi6g0443 | Vvi-Chr6 | 5219537 | 5221627 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi6g0443 | 20 | 99 | Eukaryotic Initiation Factors Gene Family | AT5G06000 | 38.750 | 1.99e-12 | 60.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g0443 | K13195 | - | vvi:100263981 | 223.787 |