Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0436 ATGAACAAGGGTTTTTGGATGCCAAAGGGTGCTGGACACTTATCTGATGGGGATACAACATTTGACAACCCTTCCAGGATTGAACCAAAGCGGTCTCATCAATGGTTTGCAGATATTGCTGAACCAGGCTTGTTTCCCAACAAAAAGCAAGCAGTACATTCCACAAGCAGCAAATCAACTTCCGGAATTTCGAATGCACATGGTTCTCCATGGGAGAACACTTCTAGTTTTCATTCAGTTCCAAACCAATTCATTGACCGGTTATTTGGACCTGAGACAGCTAGGCCTGTCAATTTCACGGAAAGGAATATCTCTCCTGTTGGAACAGATGGCTCAAGAAGCAGGGACATCGATGAGCAATTTGGAAATGATTCATCTGTTGGTTTGTCTATATCTAATGCTATTGAAGACCCTGAAACATGTCTCAGCTATGGTGGAATTAGAAAAGTTAAAGTCAATCAGGTTAGGGAATCTGATAGTAGTGAGAATGCATCAAAGGGACATAGCTATGATAGGGAAATTCACAGTAATATACCCACAGTTCAGGACTATGACAGGGGGAGTGATACCAGTTTTATGTCAATAGGGGCAGCCTACTATAAGGAGGATGAGAATGACAAGTTAATGGGTCACACATACAACACTGGAGACCATGATATACCAATGGGTCACCCTTATAATAAGGGGGATGCCAATACCATATCTTTTGGTAGCTATCATGATGAACCTGATAATATCCCCTTTGCCAGGCCCATAAGCAGCTATGGCTTATATCAGTCTTCAGTTCAAATATCAGACACAGAGAGTGAAAGAGAGTTGGATGCATCAAATGCTAATGGAACTTTAAGTTCTGCGCAGTTAGCTAAATTAAGACCTGAGTCTGCTTCCAAAAATAAATCAGAATTTAAGATGTCTAAGAAAGAAGCTCCAAACAGCTTCCCGTCAAACGTCAGAACCTTGATATCAACTGGTATGCTTGATGGGGTACCTGTGAAGTATGTCTCCTTGTCACGAGAGGAGCTTCATGGAATCATAAAAGGCTCTGGCTATCTTTGTGGGTGTCAGTCATGTAATTTTAACAAGGTACTCAACGCTTATGAATTTGAGCGTCATGCTGGTTGCAAAACAAAACACCCAAATAATCACATTTACTTTGAGAATGGGAAGACTATTTATCAGATTGTCCAAGAATTAAGGAGCACCCCTGAGAGCTTGTTATTCGATGCCATTCAAACAGTGACTGGATCTCCGATTAATCAGAAGTCCTTCCGCATTTGGAAAGAATCATTTCAAGCAGCTACACGGGAGCTTAAGCGTATCTATGGAAAGGAGGAACTGAATCTATGA 1347 0.4135 MNKGFWMPKGAGHLSDGDTTFDNPSRIEPKRSHQWFADIAEPGLFPNKKQAVHSTSSKSTSGISNAHGSPWENTSSFHSVPNQFIDRLFGPETARPVNFTERNISPVGTDGSRSRDIDEQFGNDSSVGLSISNAIEDPETCLSYGGIRKVKVNQVRESDSSENASKGHSYDREIHSNIPTVQDYDRGSDTSFMSIGAAYYKEDENDKLMGHTYNTGDHDIPMGHPYNKGDANTISFGSYHDEPDNIPFARPISSYGLYQSSVQISDTESERELDASNANGTLSSAQLAKLRPESASKNKSEFKMSKKEAPNSFPSNVRTLISTGMLDGVPVKYVSLSREELHGIIKGSGYLCGCQSCNFNKVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDAIQTVTGSPINQKSFRIWKESFQAATRELKRIYGKEELNL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0436 448 PANTHER AUTOIMMUNE REGULATOR 5 402 - -
Vvi6g0436 448 MobiDBLite consensus disorder prediction 49 75 - -
Vvi6g0436 448 MobiDBLite consensus disorder prediction 46 75 - -
Vvi6g0436 448 MobiDBLite consensus disorder prediction 155 173 - -
Vvi6g0436 448 MobiDBLite consensus disorder prediction 1 27 - -
Vvi6g0436 448 MobiDBLite consensus disorder prediction 274 293 - -
Vvi6g0436 448 Pfam Tify domain binding domain 343 398 IPR032308 -
Vvi6g0436 448 MobiDBLite consensus disorder prediction 266 310 - -
Vvi6g0436 448 MobiDBLite consensus disorder prediction 155 187 - -
Vvi6g0436 448 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0436 Vvi-Chr6 5158023 5162285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0436 292 431 PHD Transcription Factor Family AT3G53680 53.191 1.33e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0436 - - vvi:100260456 905.975