Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0435 ATGAAGAGAAGCAGAGTTGATGGAGTCGATGAGGTTGAGGCCTTAGCCATGGCCAACTGCTTGATGCTCCTGTCTAGGGTGGGAAAATCCGAATCCACCAACCAGCTCCCGGGTCGTGTGTTCGAGTGCAAGACATGTAACAGAAAATTCCCTTCATTTCAAGCGCTGGGCGGTCACAGAGCCAGCCACAAGAAGCCCAGGCTCATGGGCGACGAACTGCAGCTTCCCACCTCGCCTGCGAAGCCCAAGACTCATGAGTGCTCCATTTGTGGGTTGGAGTTCGCGATTGGGCAAGCGCTGGGCGGCCACATGAGGAGGCACAGGTCTGAGATCCATAACCCTACGCCGGTGTCGGTTGTGAAGAAGACGAGTGACGAGAGAGTTTTGTCCTTGGATTTGGACTTGAATTTAACTCCCTGGGAAAATGATTTGAAGATTCAGTTCCGGAAGGTGCCTCATATGGTGGATTGTATTTTGTAA 480 0.5229 MKRSRVDGVDEVEALAMANCLMLLSRVGKSESTNQLPGRVFECKTCNRKFPSFQALGGHRASHKKPRLMGDELQLPTSPAKPKTHECSICGLEFAIGQALGGHMRRHRSEIHNPTPVSVVKKTSDERVLSLDLDLNLTPWENDLKIQFRKVPHMVDCIL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0435 159 Pfam C2H2-type zinc finger 85 110 - -
Vvi6g0435 159 Pfam C2H2-type zinc finger 40 66 - -
Vvi6g0435 159 Gene3D Classic Zinc Finger 39 107 - -
Vvi6g0435 159 SMART c2h2final6 41 63 IPR013087 -
Vvi6g0435 159 SMART c2h2final6 85 107 IPR013087 -
Vvi6g0435 159 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vvi6g0435 159 PANTHER ZINC FINGER PROTEIN ZAT5 10 143 - -
Vvi6g0435 159 SUPERFAMILY beta-beta-alpha zinc fingers 39 107 IPR036236 -
Vvi6g0435 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Vvi6g0435 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vvi6g0435 159 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0435 Vvi-Chr6 5152508 5152987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0435 1 151 C2H2 Transcription Factor Family AT2G37430 46.154 1.99e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi6g0435 zf-C2H2_6 4.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0435 - - vvi:100265533 328.561