Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0431 ATGAAAATGGTTCAAGAGGAAATCCGAAAGGGTCCATGGACGGAAAAGGAAGACTTCCAACTAGTCTGCTTCGTGGGCTTGTTTGGAGATCGCCGATGGGATTTCATAGCAAAAGTTTCAGGTCTGAACAGAACAGGGAAAAGTTGCAGGTTACGATGGGTTAATTACCTGCACCCCGGTCTCAAACGTGGGAAGATGACACCCCATGAAGAGCGGCTGGTGCTTGAACTTCACTCTCAATGGGGAAATAGATGGTCAAGAATTGCTCGGAAATTACCAGGGCGAACGGATAACGAGATAAAGAATTACTGGAGAACACACATGAGAAAAAAGGCTCAAGAGAGAAAACGGGCTATCTCTCCATCATCACCATCTTCAAATTGTTCTTCATCAGCTCCACATAATCCTAAGGTGGATTTGCTGCCCTTCTCTGAGACTGAAGAGAGAAGCTTTCATGATACAGGAGGACCCAAGGCACTAGCTCCCACAGGGAAGAAGACTGAAGAAGAGAAGGAAGCTGACAAGGGGTATTCCATGGATGACATATGGAAGGATATTGCTTTTTCAGAAGAGAACACTATAAAACCAGTCTATGATGGCTATAAGGAAGAAGGATGTGACTTTGCTTGTCCTCCAAATCCAATGGCCTCTCCGGTGTGGGACTATTGTCCAGACTCGCTGTGGAGGATGGATGAAGAAGAAAGTAAGATGTTTCTCCCAATGAGTGATCAGTTTATTTCATCTTATGAACACGGAATGGCGTCTTTAACTGGCTAG 777 0.4505 MKMVQEEIRKGPWTEKEDFQLVCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPHEERLVLELHSQWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQERKRAISPSSPSSNCSSSAPHNPKVDLLPFSETEERSFHDTGGPKALAPTGKKTEEEKEADKGYSMDDIWKDIAFSEENTIKPVYDGYKEEGCDFACPPNPMASPVWDYCPDSLWRMDEEESKMFLPMSDQFISSYEHGMASLTG* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0431 258 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vvi6g0431 258 CDD SANT 65 108 IPR001005 -
Vvi6g0431 258 SMART sant 9 59 IPR001005 -
Vvi6g0431 258 SMART sant 62 110 IPR001005 -
Vvi6g0431 258 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Vvi6g0431 258 FunFam MYB transcription factor 65 131 - -
Vvi6g0431 258 CDD SANT 12 57 IPR001005 -
Vvi6g0431 258 MobiDBLite consensus disorder prediction 118 134 - -
Vvi6g0431 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vvi6g0431 258 FunFam Myb transcription factor 10 62 - -
Vvi6g0431 258 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vvi6g0431 258 MobiDBLite consensus disorder prediction 111 174 - -
Vvi6g0431 258 Gene3D - 65 125 - -
Vvi6g0431 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Vvi6g0431 258 Gene3D - 10 62 - -
Vvi6g0431 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 119 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vvi6g0431 258 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Vvi6g0431 258 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0431 Vvi-Chr6 5103178 5104189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0431 1 256 MYB Transcription Factor Family AT5G59780 62.646 3.45e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi6g0431 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0431 K09422 - vvi:100260318 539.265