Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0429 ATGCCGATCCCCAGAATCGCCCTCGGATCTCCGGCTGAGGCTGGCCAGGCTGATGCGCTCAAAGCCGCTCTTGCGGAGTTCATTTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGGCAGTGGCTCATGCCTTCGCACTCTTTGTGGCAGTTTCAATTGCCGCCAACATTTCCGGAGGCCATGTCAACCCTGCTGTCACCTTTGGTGCTCTGGTTGGTGGACACATAACATTGTTCAGAAGCCTTTTGTACTGGATTGCCCAGTTACTTGGTTCAGTGGTTGCTTGCTTGCTTCTTAAGTTCGCAACCGGCGGATTGACAACATCAGCTTTCTCCCTATCCTCTGGCGTGAGCGCATGGAATGCACTTGTTTTCGAGATTGTCATGACCTTCGGCCTGGTTTACACTGTATACGCAACAGCCATTGACCCGAAGAAGGGCAACATCGGCATCATTGCACCCATTGCAATTGGTTTCATCGTGGGTGCCAACATCTTGGCTGGTGGTGCCTTCGATGGTGCATCCATGAACCCTGCAGTCTCCTTCGGACCTGCTGTGGTTAGCTGGACATGGTCTAACCACTGGGTCTACTGGCTCGGTCCATTTATTGGTGCTGCCATTGCTGCATTCGTTTACTCCATCTTCTACCTCAGCCCAACCACCCACGAGCAACTCCCTACCACAGATTACTGA 759 0.5296 MPIPRIALGSPAEAGQADALKAALAEFISVLIFVFAGEGSGMAFNKLTDDGSSTPAGLVAAAVAHAFALFVAVSIAANISGGHVNPAVTFGALVGGHITLFRSLLYWIAQLLGSVVACLLLKFATGGLTTSAFSLSSGVSAWNALVFEIVMTFGLVYTVYATAIDPKKGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWSNHWVYWLGPFIGAAIAAFVYSIFYLSPTTHEQLPTTDY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0429 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Vvi6g0429 252 Gene3D Glycerol uptake facilitator protein. 5 252 IPR023271 -
Vvi6g0429 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0429 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0429 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0429 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0429 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0429 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0429 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0429 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vvi6g0429 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Vvi6g0429 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g0429 252 SUPERFAMILY Aquaporin-like 18 244 IPR023271 -
Vvi6g0429 252 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0429 Vvi-Chr6 5090781 5091733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0429 1 252 Major Intrinsic Protein MIP AT2G36830 77.778 4.61e-140 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0429 K09873 - vvi:100250080 460.299