Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0427 ATGATGATATCGAGAGGCCTCTTTGGATGGTCCCCGCCGCATATACAGCCATTAACGCCGGTATCGGAGGTGTCGGAGCCGCCGGAGTCTCCTTCGCCGTACTTGGAACAGAGTAATGACGCGGGGCCAGCGCCCGCGGAGGACGATCAGGAGATTGACGAGGGGGAGGAGATGGAGCAGCCGCCGGCGGCTGTGCCTTTCTCGCGGCTCTTTGCTTGCGCCGACCGACTGGATTGGGTTCTGATGATCGTAGGATCAGTGGCTGCTGCGGCTCACGGCGCAGCTCTGGTCATATATTTGCATTTTTTCGGCAAGGTTATTCAGTTGTTGAGTTATCGTCATCCAGAGGAATCAGATGAGCTATTTCAGAAGTTCAATCAGCATTCTCTGCACATTATTTATATAGCTTCCGGTGTTTTCCTGGCTGGTTGGATTGAGGTATGGTGCTGGATTCTTACTGGAGAAAGACAGACTGCTGTCATTAGGTCAAAGTATGTACAAGTATTGCTTAACCAGGACATGAGCTTTTTTGACACATATGGGAACAATGGGGACATTGTGAGCCAAGTTTTGAGTGATGTTCTACTCATTCAGTCTGCTCTTAGTGAAAAAGTTGGGAATTATGTTCACAATATGGGAACCTGTTTCAGTGGTCTTGTGATCGGATTCATCAACTGTTGGCAGATTGCACTCATAACATTAGCCACTGGACCGTTTATTGTTGCTGCAGGAGGAATATCTAACATATTTCTCCATAAACTTGCTGAAAATATTCAAGATGCATATGCAGAGGCAGCAAATATGGCTGAGCAGGCAATGTCTTATATTAGGACCTTATGTGCATTCACAAATGAAACACTGGCCAAGTATTCCTATGCAACTTCTCTCCAAGCAACATTGAGATATGGTATATTGATAAGTCTTGTGCAAGGACTTGGTCTTGGCTTCACGTATGGGCTTGCAATATGTTCATGTGCATTACAGTTATGGGTTGGGAGATTGCTAGTTACTCATAGGAAAGCCCATGGTGGCGAAATTATAGCAGCTCTATTTGCTATTATCTTAAGTGGCCTTGGACTGAATCAGGCAGCAACAAACTTCTATTCTTTTGACCAAGGGCGAATTGCTGCTTATAGACTTTATGAGATGATAAGCCGTTCAACATCCACCATTAATCAGGATGGGAATACCTTAGTTTCTGTGCAGGGAAATATCGAGTTCCGGAATGTTTACTTCAGCTACCTCTCTCGTCCTGAAATTCCTATCTTAAGTGGGTTTTACTTAACCGTACCTGCTAGAAAAACTGTAGCTCTTGTTGGCAGGAATGGATCAGGAAAAAGTAGTATAATCCCACTCATGGAACGGTTCTATGATCCTACATTAGGAGAGGTACTTTTGGATGGACAAAATATTAAAAGCCTGAAACTGGAATGGTTAAGAAGCCAAATTGGACTTGTGACCCAGGAACCTGCCTTACTAAGTCTGAGCATAAGAGATAACATTGCTTATGGGCGGTCCAATGCTACTTTTGATCAAATTGAAGAAGCTGCTAAAATAGCACATGCACATGCATTTATCAGCTCTCTTGAGAAAGGATATGAAACACAGGTGGGTCGAATTGGTTTAGCATTGACAGAAGAGCAAAAAATAAAAATTTCTGTTGCTAGGGCAGTGCTTTCAAACCCATCCATTCTTCTGCTTGATGAAGTTACTGGTGGCCTTGATTTTGAAGCAGAAAGTGCTGTTCAGGAGGCTCTAGACATCCTCATGTTGGGACGATCAACGATAATCATAGCTCGGCAGCTAAGTCTTATAAGGAATGCTGATTACATTGCTGTGATGGAGGAGGGCCAGCTTGTTGAAATGGGTACACATGATGAATTATTAAGCTTGGATGGCCTGTATACAGAACTTCTCAGGTGTGAAGAAGCTACAAAACCTCCTAAAAGGACACCAATTAGAACGCACAAGGAGAACACAACTTCCCAAGTAGAGAAGGACTCACCAGAAAATAACTCCTTTGAAGAATCATCATCTCCTAAGATGGTTAAGTCACCATCTCTTCAGAGGGTCCATGGTAGTCATGCAATTCGGCCTACAGATGAAACTTATAACTTTCAAGAGTCACCTAAAACTCAGAGCACACCTCCAGATCAAATACTAGAACATGGTTTGTCATTAGACGCAATTGAACAGGAGCCATCAATAAAAAGAGAGGATAGTTTTGGAAAGAGATTACCAGAGTTACCTAAGATTGATGTTACTTCAATAAGTCAACAGGCCTCAAATGATTCAGACCCGGAATCCCCAATTTCACCTCTGCTAAGCACATGCGATCCAAAGAAAGAACGATCCCACTCAAAAAGTTTCAGTCAACCGATTGGTCAGTTAAGTGATGTGGCTATGAAACAGAGGGAGGTGAATGATAAACAATGCCAGAAACCTCCTCCATTTTGGAGGCTCGTAGAGCTTAGTTTGGCAGAATGGTTATATGCAGTTTTAGGAAGTATTGGTGCTGCCGTGTTTGGTTCTTTTATTCCTCTTCTTGCTTATGTTCTTGCACTTATTGTGACGGCATATTATAGACCTGAAGAACATAATCACCTGCAGAATGAGGTGAACAAATGGTGTTTGATCCTCTCATGCATGGGTGTTGTGACAGTGGTCGCCAATTTTTTGCAGCACTTCTATTTTGGTATAATGGGAGAGAAAATGACTGAACGAGTTAGGAGAATGATGTTTTCCGCAATGCTTAGGAATGAAGTAGGATGGTTTGATGAAGAGGAGAACAGTGTTGATACCTTATCCATGCGCTTGGCCAATGATGCCACATTTGTGCGTGCAGCTTTTAGCAATCGGCTTTCTGTTTTTATCCAGGATAGTGCAGCTGTTGTTGCTGCTGTTATTGTTGGGATGTTGCTTGAGTGGCGATTGGCATTTGTTGCTTTGGGTACCTTACCCATTCTTATTGTTTCTGCTATTGCACAGAAGTTATGGCTTGCTGGGTTCTCAAGGGGCATACAAGAGATGCACAGGAAGGCGTCTATGGTCCTCGAAGATGCAGTTAGAAATATTTACACTGTTGTAGCATACTGTGCTGGAAACAAGGTAATGGAGCTTTATAGACTGCAGCTGAAGAAAATTTATAAGCAAAGCTTCCTTCAAGGAATGGTGATAGGCTTTGCCTTTGGACTTTCGCAATATCTTCTTTTTGCCTGTAATGCTCTTCTTCTTTGGTATACTGCTCACTCCGTTAAAAATGGCTATGTTGGTCTTCCAACAGCACTCAAGGAGTATATGGTATTCTCTTTTGCAACCTTTGCTCTGGTGGAACCATTTGGCCTGGCCCCTTACATACTGAAAAGGCAGAAATCTCTCATTTCAGTTTTTGAAATCATTGATCGTGTCCCTAAGATTGACCCAGATGATAACTCTGCGCTGAAACCTCCTAATGTATATGGAAGCATTGAGTTGAAAAATGTTGATTTCTGTTATCCAACTCACCCAAAATCGATGGTGTTGAACAATTTCAGTCTAAAAGTCAATGGAGGACAAACTGTAGCAATAGTGGGAGTTTCAGGTTCTGGAAAGAGCACTATAATTTCTTTGATAGAGAGGTTTTATGATCCAGTTTCTGGTCAGATTTTATTGGATGGAAGAGATCTAAAACTGTTCAATTTGAGATGGTTGAGGAATCACCTGGGTCTTGTTCAGCAGGAACCTGTAGTGTTTTCAACGACCATTAGAGAAAACATCATATATGCAAGGCATAATGGTACTGAAGCTGAGATGAAAGAGGCAGCAAGAATAGCTAATGCACACCGTTTCATTAGCAGCTTGCCTCATGGTTACGATACTCATGTGGGCATGAGGGGAGTGGATCTAACACCAGGCCAAAAGCAGAGAATTTCAATTGCACGAGTAGTGCTGAAGAATGCACCCATTTTATTACTGGACGAGGCAAGCTCTGCAATTGAGTCTGAATCAAGCCGGGTGGTGCAGGAGGCCCTAGACACACTGATTATGGGGAACAAAACAACCATTCTCATTGCACATACAGCTGCGATGATGAGGCATGTTGACAACATAGTGGTTCTTAATGGAGGCCGGATTGTGGAACAAGGAACTCATGATTCTCTTGTAGCAAGGAATGGTTTATATGTACAGTTAATGCAACCTCACTTTGCAAAGGGTTTGCGGCAGCACCGACTTGTCTAG 4218 0.4291 MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLEQSNDAGPAPAEDDQEIDEGEEMEQPPAAVPFSRLFACADRLDWVLMIVGSVAAAAHGAALVIYLHFFGKVIQLLSYRHPEESDELFQKFNQHSLHIIYIASGVFLAGWIEVWCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYVHNMGTCFSGLVIGFINCWQIALITLATGPFIVAAGGISNIFLHKLAENIQDAYAEAANMAEQAMSYIRTLCAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRLLVTHRKAHGGEIIAALFAIILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSTSTINQDGNTLVSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGQNIKSLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRSNATFDQIEEAAKIAHAHAFISSLEKGYETQVGRIGLALTEEQKIKISVARAVLSNPSILLLDEVTGGLDFEAESAVQEALDILMLGRSTIIIARQLSLIRNADYIAVMEEGQLVEMGTHDELLSLDGLYTELLRCEEATKPPKRTPIRTHKENTTSQVEKDSPENNSFEESSSPKMVKSPSLQRVHGSHAIRPTDETYNFQESPKTQSTPPDQILEHGLSLDAIEQEPSIKREDSFGKRLPELPKIDVTSISQQASNDSDPESPISPLLSTCDPKKERSHSKSFSQPIGQLSDVAMKQREVNDKQCQKPPPFWRLVELSLAEWLYAVLGSIGAAVFGSFIPLLAYVLALIVTAYYRPEEHNHLQNEVNKWCLILSCMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSVDTLSMRLANDATFVRAAFSNRLSVFIQDSAAVVAAVIVGMLLEWRLAFVALGTLPILIVSAIAQKLWLAGFSRGIQEMHRKASMVLEDAVRNIYTVVAYCAGNKVMELYRLQLKKIYKQSFLQGMVIGFAFGLSQYLLFACNALLLWYTAHSVKNGYVGLPTALKEYMVFSFATFALVEPFGLAPYILKRQKSLISVFEIIDRVPKIDPDDNSALKPPNVYGSIELKNVDFCYPTHPKSMVLNNFSLKVNGGQTVAIVGVSGSGKSTIISLIERFYDPVSGQILLDGRDLKLFNLRWLRNHLGLVQQEPVVFSTTIRENIIYARHNGTEAEMKEAARIANAHRFISSLPHGYDTHVGMRGVDLTPGQKQRISIARVVLKNAPILLLDEASSAIESESSRVVQEALDTLIMGNKTTILIAHTAAMMRHVDNIVVLNGGRIVEQGTHDSLVARNGLYVQLMQPHFAKGLRQHRLV* 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0427 1405 Pfam ABC transporter 426 571 IPR003439 GO:0005524
Vvi6g0427 1405 MobiDBLite consensus disorder prediction 700 720 - -
Vvi6g0427 1405 Gene3D ABC transporter type 1, transmembrane domain 757 1000 IPR036640 GO:0005524|GO:0016020
Vvi6g0427 1405 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 405 641 IPR003439 GO:0005524
Vvi6g0427 1405 CDD ABC_6TM_Pgp_ABCB1_D2_like 824 1139 - -
Vvi6g0427 1405 FunFam ABC transporter B family member 20 395 643 - -
Vvi6g0427 1405 Gene3D ABC transporter type 1, transmembrane domain 69 660 IPR036640 GO:0005524|GO:0016020
Vvi6g0427 1405 MobiDBLite consensus disorder prediction 732 747 - -
Vvi6g0427 1405 Pfam ABC transporter 1174 1322 IPR003439 GO:0005524
Vvi6g0427 1405 CDD ABC_6TM_Pgp_ABCB1_D1_like 102 380 - -
Vvi6g0427 1405 MobiDBLite consensus disorder prediction 643 672 - -
Vvi6g0427 1405 Gene3D - 395 643 IPR027417 -
Vvi6g0427 1405 Gene3D - 1146 1393 IPR027417 -
Vvi6g0427 1405 FunFam ABC transporter B family member 6 1003 1153 - -
Vvi6g0427 1405 FunFam ABC transporter B family member 20 1146 1395 - -
Vvi6g0427 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 640 IPR027417 -
Vvi6g0427 1405 Gene3D ABC transporter type 1, transmembrane domain 1069 1145 IPR036640 GO:0005524|GO:0016020
Vvi6g0427 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 833 1114 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi6g0427 1405 FunFam ABC transporter B family member 20 69 408 - -
Vvi6g0427 1405 FunFam ABC transporter B family member 6 772 1001 - -
Vvi6g0427 1405 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1156 1393 IPR003439 GO:0005524
Vvi6g0427 1405 MobiDBLite consensus disorder prediction 753 772 - -
Vvi6g0427 1405 Coils Coil 251 271 - -
Vvi6g0427 1405 SMART AAA_5 432 618 IPR003593 GO:0016887
Vvi6g0427 1405 SMART AAA_5 1183 1370 IPR003593 GO:0016887
Vvi6g0427 1405 MobiDBLite consensus disorder prediction 643 792 - -
Vvi6g0427 1405 Pfam ABC transporter transmembrane region 840 1096 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi6g0427 1405 Pfam ABC transporter transmembrane region 82 355 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi6g0427 1405 MobiDBLite consensus disorder prediction 14 59 - -
Vvi6g0427 1405 PANTHER ABC TRANSPORTER B FAMILY 49 641 IPR039421 -
Vvi6g0427 1405 SUPERFAMILY ABC transporter transmembrane region 62 380 IPR036640 GO:0005524|GO:0016020
Vvi6g0427 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 83 372 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi6g0427 1405 SUPERFAMILY ABC transporter transmembrane region 816 1141 IPR036640 GO:0005524|GO:0016020
Vvi6g0427 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1145 1393 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0427 Vvi-Chr6 5064960 5072488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0427 39 716 Calmodulin-binding Proteins AT2G36910 42.105 3.63e-166 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0427 K05658 - vvi:100267249 2703.7