Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi6g0418 | ATGGCGAGGATCAAGGTTCACGAGCTGAGAGGTAAGCCTAAGGCCGATCTGTTGGCCCAATTGAAGGAGCTGAAAGCAGAGCTCGCTCTTCTCCGAGTCGCCAAGGTCACTGGTGGTGCTCCCAACAAGCTTTCTAAGATAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCTCTGGATTTGCGTACTAAGAAGACCAGAGCTATCAGGAAACGCCTTACTAAGCATCAGGTATACTAA | 306 | 0.5 | MARIKVHELRGKPKADLLAQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKFLPLDLRTKKTRAIRKRLTKHQVY* | 102 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi6g0418 | 101 | PANTHER | 60S RIBOSOMAL PROTEIN L35 | 1 | 99 | IPR045059 | GO:0000463|GO:0022625 | |
| Vvi6g0418 | 101 | Gene3D | - | 78 | 100 | - | - | |
| Vvi6g0418 | 101 | Pfam | Ribosomal L29 protein | 8 | 64 | IPR001854 | GO:0003735|GO:0005840|GO:0006412 | |
| Vvi6g0418 | 101 | NCBIfam | 50S ribosomal protein L29 | 8 | 64 | IPR001854 | GO:0003735|GO:0005840|GO:0006412 | |
| Vvi6g0418 | 101 | Hamap | 50S ribosomal protein L29 [rpmC]. | 4 | 64 | IPR001854 | GO:0003735|GO:0005840|GO:0006412 | |
| Vvi6g0418 | 101 | Gene3D | - | 1 | 77 | IPR036049 | GO:0003735|GO:0005840|GO:0006412 | |
| Vvi6g0418 | 101 | FunFam | 60S ribosomal protein L35 | 1 | 77 | - | - | |
| Vvi6g0418 | 101 | Coils | Coil | 14 | 34 | - | - | |
| Vvi6g0418 | 101 | CDD | Ribosomal_L29_HIP | 8 | 64 | - | - | |
| Vvi6g0418 | 101 | SUPERFAMILY | Ribosomal protein L29 (L29p) | 4 | 65 | IPR036049 | GO:0003735|GO:0005840|GO:0006412 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi6g0418 | 1 | 99 | Cytoplasmic Ribosomal Protein Gene Family | AT2G39390 | 88.889 | 3.71e-55 | 165 |