Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0407 ATGAGCACTGCTAATTTCTCTGTTTCCACCCAAAATCATGTCCTTATAAGCAACTTCAGTCCGAAGGCTGGTTCTGCTATGAAGGAATTCTCTGAAAATGTGACTTCAGATACCCTTGTTATTACCTTCGCTCCTTCCAGCAATTCATTTGCTTTCTTGAATGCCTTAGAAGTTGTTTCTGTACCAAATGAGCTGATTAGTGATGATGCCATCACCATCACGCCGTCAGGGAAGTTCAAGGGTCTTGTGACACAGGCCCTGGAGACGGTTGCAAGGGTGAATATGGGAGGACCAACGGTCACCTCTGAGAACGATACCCTTTGGCGAACTTGGCTTCCTGATCAGAATTTCTTGGTAGAGAATAATCTTGCAACCAATGTATCAAAAATTGGAGCTGTCATATATGCGAAAGGGGGGCCTACAAAGCTTATTGCTCCGGCTTCTGTCTATGGTACTGCCACTAAGATGAACTCAGATGCTAATCCTCAGTACAATTTCAACGTGACATGGGAGTTCGATGTGGATCCAGGGTTTCAGTACCTTGTTCGGTATCACTTTTGTGATATCGTGAGTATATCTCTCAACCAGCTATACTTCAATGTTTATCTGGACTCCTACCTTGTCTATGAGGAGCTGGATCTCAGTACTTTGGCATTTAACATTTTAGGTGCTCCATATTATTTAGACGTTGTCACAGGAACAAGGGTTGGCAGCAAGCTTCGTGTAAGTATTGGACCGTCTTCCATACATACTGAGTATCCTGATGCCATTCTAAATGGGTTGGAGATCATGAAAATGAACAGTTCTATGGGCAGCCTTAGTGGATCTGTGATTGTCTCAAACCCAAGCTCAAAAAAGAATGTTGCAGTGGTAATTGGCGCAAGTGTTGGGGTGTTTGCTGCATTGATATTGGCTGGTGTTTTCTTTCTGGTGTACAGAAGAAGAAGAAAACTGGCACGTCAAGGCCATTCAAAGACATGGATGGCTTTCTCCACTAATGGAGGGAATTCTCACACGATGGGAAGTAAATACTCTAATGGAACAATTGCAAGTGCTGGTTCTAACTTTGGGTATCGAATTCCCTTTCTGGCAGTTCAAGAGGCTACAAACAACTTTGATGAGAGTTGGGTTATTGGAATTGGTGGTTTTGGAAAAGTTTACAAGGGGACTTTAAATGATGGTACAAAAGTAGCTGTTAAAAGAGGAAATCCCAGGTCCCAGCAGGGTCTTGCAGAGTTTCAAACCGAAATTGAGATGCTATCTCAGTTCCGCCACCGCCATTTAGTTTCATTAATTGGGTATTGTGATGAAAAAAATGAGATGATTTTGATATATGAATATATGGAGAATGGAACCGTCAAGAGCCATCTCTATGGCTCGGGTCTTCCCAGTTTGGATTGGAAGGAGAGGCTTGAGATATGCATCGGGGCTGCCAGAGGACTTCACTACCTTCACACTGGCTATGCAAAAGCAGTTATTCATCGTGATGTAAAGTCTGCAAATATCTTGCTTGATGAGAATCTTATGGCTAAAGTCGCTGATTTTGGGCTTTCAAAAACTGGACCTGAGATTGATCAGACCCATGTTAGTACGGCTGTGAAAGGGAGTTTTGGGTACCTTGATCCTGAATATTTCAGGAGGCAACAGTTGACAGAGAAATCTGATGTGTATTCATTTGGGGTGGTTTTGTTTGAAGTACTTTGTGCAAGACCTGTTATTGATCCAACCCTTCCAAGGGAAATGGTGAACTTAGCTGAGTGGGCAATGAAGTGGCAGAAGAGAGGCCAGTTGGAACAGATCATAGACCCTAACCTTGTGGGAAAAATCAGACCAGATTCCCTCAGAAAGTTTGGAGAAACGGCTGAGAAATGCTTGTCTGACTTTGGTGTTGACAGGCCTTCCATGGGTGACATCTTGTGGAATCTGGAGTATGCGCTTCAACTTCAAGAAGCAGTTCTTGTAGGTGATCCTGAAGAAAACAGTACTAATCTGATTGGAGAGCTTGCTCCACAAGTCAACAATTTCAATCATGCTGACACTAGTGTTTCTGCTGCTCAGTTTGAAGTGTCAAGCGTGGACGATCTTTCTGGTATCTCAATGAGCAGGGTATTCTCACAGCTCGTGAAGTCTGAGGGTAGATGA 2142 0.4337 MSTANFSVSTQNHVLISNFSPKAGSAMKEFSENVTSDTLVITFAPSSNSFAFLNALEVVSVPNELISDDAITITPSGKFKGLVTQALETVARVNMGGPTVTSENDTLWRTWLPDQNFLVENNLATNVSKIGAVIYAKGGPTKLIAPASVYGTATKMNSDANPQYNFNVTWEFDVDPGFQYLVRYHFCDIVSISLNQLYFNVYLDSYLVYEELDLSTLAFNILGAPYYLDVVTGTRVGSKLRVSIGPSSIHTEYPDAILNGLEIMKMNSSMGSLSGSVIVSNPSSKKNVAVVIGASVGVFAALILAGVFFLVYRRRRKLARQGHSKTWMAFSTNGGNSHTMGSKYSNGTIASAGSNFGYRIPFLAVQEATNNFDESWVIGIGGFGKVYKGTLNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTVKSHLYGSGLPSLDWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKRGQLEQIIDPNLVGKIRPDSLRKFGETAEKCLSDFGVDRPSMGDILWNLEYALQLQEAVLVGDPEENSTNLIGELAPQVNNFNHADTSVSAAQFEVSSVDDLSGISMSRVFSQLVKSEGR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0407 713 Gene3D Transferase(Phosphotransferase) domain 1 448 661 - -
Vvi6g0407 713 Gene3D Phosphorylase Kinase; domain 1 337 447 - -
Vvi6g0407 713 CDD STKc_IRAK 378 643 - -
Vvi6g0407 713 Pfam Protein tyrosine and serine/threonine kinase 377 570 IPR001245 GO:0004672|GO:0006468
Vvi6g0407 713 SMART serkin_6 372 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0407 713 FunFam Receptor-like protein kinase FERONIA 86 268 - -
Vvi6g0407 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Vvi6g0407 713 Pfam Malectin-like domain 17 266 IPR024788 -
Vvi6g0407 713 SUPERFAMILY Protein kinase-like (PK-like) 352 643 IPR011009 -
Vvi6g0407 713 ProSitePatterns Protein kinases ATP-binding region signature. 378 400 IPR017441 GO:0005524
Vvi6g0407 713 CDD TM_EGFR-like 291 321 - -
Vvi6g0407 713 FunFam Receptor-like protein kinase FERONIA 448 663 - -
Vvi6g0407 713 ProSiteProfiles Protein kinase domain profile. 372 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0407 713 PANTHER OS07G0166700 PROTEIN 359 649 IPR045272 GO:0004714|GO:0006468
Vvi6g0407 713 Gene3D - 85 268 - -
Vvi6g0407 713 FunFam receptor-like protein kinase FERONIA 336 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0407 Vvi-Chr6 4842530 4844671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0407 1 713 Receptor kinase-like Gene Family AT3G46290 69.487 0.0 1029
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi6g0407 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0407 - - vvi:100251868 1417.14