Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0405 ATGGGGAAAGGGGGGCAAGGCTATGGGAAAAGAAACCCTAATGATGCCAACACAGTTGAAATCTTCGCTGCATGGGCGAAGAATGTTAAAGAATGCGAAGAGAAGCTCCAGGTGAATCACGAATTCGGATTGTCAACGGCTGAGGTTGAAAAGCGGCGCGAGATCTATGGTTACAACGAGTTGGAGAAGCATGAGGGTCCTTCAATTTTGAGACTGATTTTGGATCAGTTCAATGACACTCTAGTTAGGATTCTGTTGGTTGCTGCAGTTATTTCATTTGTTTTGGCTTGGTACGATGGCGAAGAGGGTGGGGAAATGGAAATCACTGCGTTTGTAGAACCATTGGTGATTTTTTTGATCTTGATTGTGAATGCTATAGTTGGGGTTTGGCAGGAGAGTAATGCGGAGAAGGCATTAGAGGCTCTTAAGGAAATTCAATCAGAGCATGCAACAGTGATTCGGGATGGTAAAAAGGTTCCAAATTTGCCGGCAAAAGAACTTGTTCCAGGAGATATTGTTGAATTAAGGGTTGGTGATAAGGTACCTGCAGATATGCGGGTTTTGAGTTTGATAAGTTCGACTCTTCGGGTTGAGCAAGGATCCTTAACAGGAGAGAGTGAAGCCGTTAATAAGACAACTAAGGTTGTGCCAGAGGATTCAGATATTCAGGGTAAGAAGTGCATGGTTTTTGCAGGGACAACTGTGGTGAATGGAAATGGTATATGTTTGGTTACAGAGACGGGAATGAATACGGAGATAGGGAAGGTGCATTTGCAAATTCATGAAGCCTCGCAGAGTGAAGAAGATACACCTTTGAAGAAGAAGTTGAATGAGTTTGGAGAGCTTCTTACTGCCATAATTGGAGTAATTTGTGCATTGGTTTGGCTTATTAATGTAAAATACTTCCTTACTTGGGAGTATGTTGATGGGTGGCCTAGGAATTTTAAATTCTCATTTGAGAAGTGCACTTATTACTTTGAAATTGCTGTGGCGTTAGCAGTGGCTGCAATTCCAGAAGGTTTGCCAGCAGTCATCACAACTTGTTTGGCGCTTGGAACAAGAAAGATGGCACAGAAGAATGCACTTGTTCGGAAGTTACCTAGTGTTGAAACTCTTGGTTGTACAACTGTAATTTGTTCTGATAAAACAGGCACTTTGACTACCAACCAAATGGCAGTTGCAAAGCTTGTGGCTATGGGCCCTAGGGTGTACACTGTTCGAAATTTCAATGTGGAAGGGACCTCATATAGTCCTTTTGATGGAAGAATACTGGACTGGCCTGCAGGTCGGATGGATGCTAATCTTCAAATGATTGCGAAGATTGCAGCAGTGTGCAATGATGCTGATGTTGAATACTCTGGGCAACATTTTGTTGCCAATGGAATGCCCACTGAGGCAGCCTTGAAGGTTCTGGTTGAGAAAATGGGACTTCCTGAAGGATTTGATAATGGTTCATCTTTGGATAATAGCGCTGTACTCCGTTGTTCTCAACTATGGAATAAAATCGAACATCGAATTGCAACCCTTGAATTCGATCGTGATCGCAAATCCATGGGAGTTATTGTGAATTCCAGCTCAGGCAAAAAGGCATTGCTAGTGAAGGGTGCAGTAGAAAATGTGTTGGAAAGAAGCTCATATATTCAGTTGCTTGATGGTTCTATTGTAGAACTTGATAGAAAATCAAGGGATCTTATTTTACAAAGCCTTTATCAAATGTCAACAAGTGCATTACGCTGTTTGGGATTTGCATACAAGGAAGATCTTTTGGAGTTTGCAACATATAATGGAGATGAAGACCATCCAGCTCATCAGCTTCTACTTAGACCATCAAATTACTCTGTAATTGAAAGTAAACTCATTTTTGTTGGTTTGGTTGGGCTGAGGGATCCACCACGGAAAGAGGTTCGTCAAGCAATTGAAGACTGTAGAGCAGCTGGAATTCGTGTTATGGTTATTACAGGTGACAACAAGAATACAGCAGAAGCTATTTGTCGTGAAATTGGAGTTTTTGGATCTAAGGAAGACATTAGTTTAAAAAGCATAACGGGGAAAGAGTTTATGGAGCATTATGATCAGAAAACTCATTTGAGGCAAAATGGGGGCCTCCTGTTCTCTAGGGCTGAACCAAGGCATAAGCAGGAAATAGTGAGGTTGCTCAAAGAGGATAATGAGGTGGTTGCAATGACTGGTGATGGAGTGAATGATGCACCAGCCTTGAAATTGGCTGATATTGGGATTGCAATGGGCATTACTGGGACAGAGGTTGCAAAGGAAGCCTCTGACATGGTCTTGGCAGATGATAATTTTAACACAATAGTTGCTGCTGTTGGTGAAGGCAGATCCATTTACAACAATATGAAGGCTTTTATCAGGTACATGATTTCATCAAATATTGGCGAGGTTGCCTCTATATTTCTGACAGCTGCTTTAGGTATTCCAGAAGGCCTGATTCCTGTTCAGCTTCTGTGGGTGAATCTTGTCACTGATGGTCCCCCAGCAACAGCTTTGGGATTTAATCCACCTGACAAAGATATAATGAAGAAACCCCCTAGAAGAAGTGATGATTCATTGATCACTCCCTGGATTTTATTCCGCTATCTGGTGATTGGGCTCTATGTTGGAATAGCAACTGTGGGAATATTCATCATATGGTACACACATGGGACATTCCTGGGGATTGATTTGAGTGGAGATGGCCACAGTCTTGTTACCTATTCCCAACTTGCTAACTGGGGTCAATGCCCTTCCTGGGAGGGTTTCTCGGCATCACCCTTCACAGCAGGGGCGCAAGTGTTCAGTTTTGATGCAAATCCATGTGACTACTTCCAGACTGGAAAAATCAAAGCCATGACTCTTTCCCTCTCTGTCCTGGTTGCCATAGAGATGTTCAATTCCCTTAATGCCCTATCCGAGGATGGGAGCCTTTTGACAATGCCCCCATGGGTCAATCCCTGGCTCCTCGTTGCCATGTCCATCTCTTTTGCCCTGCACTTCTTGATCGTGTATGTGCCATTCCTCGCACAAATTTTTGGCATTGTTGCCCTCAGCCTCAATGAATGGCTCTTGGTGTTGGTTGTGGCATTCCCGGTAATTCTGATTGATGAGCTACTCAAATTTGTGGGAAGGTGTACCAGTGGGTTGCGGTCATCGGATGCTAGAAGATATTCAAAGCACAAGGCAGAATAA 3186 0.4316 MGKGGQGYGKRNPNDANTVEIFAAWAKNVKECEEKLQVNHEFGLSTAEVEKRREIYGYNELEKHEGPSILRLILDQFNDTLVRILLVAAVISFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHATVIRDGKKVPNLPAKELVPGDIVELRVGDKVPADMRVLSLISSTLRVEQGSLTGESEAVNKTTKVVPEDSDIQGKKCMVFAGTTVVNGNGICLVTETGMNTEIGKVHLQIHEASQSEEDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKLVAMGPRVYTVRNFNVEGTSYSPFDGRILDWPAGRMDANLQMIAKIAAVCNDADVEYSGQHFVANGMPTEAALKVLVEKMGLPEGFDNGSSLDNSAVLRCSQLWNKIEHRIATLEFDRDRKSMGVIVNSSSGKKALLVKGAVENVLERSSYIQLLDGSIVELDRKSRDLILQSLYQMSTSALRCLGFAYKEDLLEFATYNGDEDHPAHQLLLRPSNYSVIESKLIFVGLVGLRDPPRKEVRQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFGSKEDISLKSITGKEFMEHYDQKTHLRQNGGLLFSRAEPRHKQEIVRLLKEDNEVVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFNTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLITPWILFRYLVIGLYVGIATVGIFIIWYTHGTFLGIDLSGDGHSLVTYSQLANWGQCPSWEGFSASPFTAGAQVFSFDANPCDYFQTGKIKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLVAMSISFALHFLIVYVPFLAQIFGIVALSLNEWLLVLVVAFPVILIDELLKFVGRCTSGLRSSDARRYSKHKAE* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0405 1061 SFLD C1.7: P-type atpase like 360 781 - -
Vvi6g0405 1061 Gene3D - 43 263 - -
Vvi6g0405 1061 Gene3D - 75 1042 - -
Vvi6g0405 1061 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 627 IPR023299 GO:0000166
Vvi6g0405 1061 Pfam haloacid dehalogenase-like hydrolase 376 743 - -
Vvi6g0405 1061 PRINTS P-type cation-transporting ATPase superfamily signature 645 655 - -
Vvi6g0405 1061 PRINTS P-type cation-transporting ATPase superfamily signature 623 634 - -
Vvi6g0405 1061 PRINTS P-type cation-transporting ATPase superfamily signature 729 748 - -
Vvi6g0405 1061 PRINTS P-type cation-transporting ATPase superfamily signature 198 212 - -
Vvi6g0405 1061 PRINTS P-type cation-transporting ATPase superfamily signature 753 765 - -
Vvi6g0405 1061 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Vvi6g0405 1061 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 243 394 - -
Vvi6g0405 1061 FunFam Calcium-transporting P-type ATPase, putative 625 774 - -
Vvi6g0405 1061 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 793 1047 - -
Vvi6g0405 1061 NCBIfam HAD-IC family P-type ATPase 116 306 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi6g0405 1061 NCBIfam HAD-IC family P-type ATPase 703 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi6g0405 1061 NCBIfam HAD-IC family P-type ATPase 318 398 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi6g0405 1061 SUPERFAMILY Calcium ATPase, transduction domain A 147 256 IPR008250 -
Vvi6g0405 1061 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Vvi6g0405 1061 PANTHER CALCIUM-TRANSPORTING ATPASE 25 1049 - -
Vvi6g0405 1061 Gene3D - 389 630 IPR023299 GO:0000166
Vvi6g0405 1061 SFLD p-type atpase 360 781 IPR044492 -
Vvi6g0405 1061 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 389 630 - -
Vvi6g0405 1061 SMART Cation_ATPase_N_a_2 23 97 IPR004014 -
Vvi6g0405 1061 Pfam Cation transporting ATPase, C-terminus 814 1040 IPR006068 -
Vvi6g0405 1061 Gene3D - 376 774 IPR023214 -
Vvi6g0405 1061 FunFam Calcium-transporting ATPase, putative 125 261 - -
Vvi6g0405 1061 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1043 IPR023298 -
Vvi6g0405 1061 SUPERFAMILY HAD-like 377 833 IPR036412 -
Vvi6g0405 1061 Pfam E1-E2 ATPase 145 359 - -
Vvi6g0405 1061 Pfam Cation transporter/ATPase, N-terminus 25 92 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0405 Vvi-Chr6 4828171 4833858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0405 1 1061 Primary Pumps ATPases(2) AT1G07670 82.408 0.0 1786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0405 K01537 - vvi:100243325 2099.32