Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0402 ATGTACGGACACACCAACCACTCCCTCTTCTCCGACTTCCTCGGCCACTTTCCGGCCTCCGACGTCCCTCCTCCTCCCTTCGTCTTTCCCGTAGCTCCGCCTCCTCCTCCTCCTCCTCCTCATCTCTCCCTCTCTGCTGTCGACGACTTCGACTCCGTCTCCATCTCCGATGCTCTGCTGCCTCACAACTCCGACCTCGGCAACAGTTGCAGCAGCGGCGGCTCCTCGAGTTCCCTCACCACGAGTTACTCCACTCAGAGACCGAGTTTCATCCAGAGAAGTGTGAGCAGCCACTCGCTTCAGCACAACGGCCGCCACCCCCACCCCATTTCGCTGGTGTCGGAGTTCCTGGAGTCAGAGTCGCCTGTGAGGAGAGTTTACAGCACCGGCGATTTGCAGAGAATTAACATGATGCAACACCATCATCGACCCGAAATCTCCATATCGAATGACACTAGTATCATTGAAGGTATGATGACCAAGGCCTCTCGATACAGTCCGGAGGAGAAGAAGGAGAGAATAGAGAGGTATAGGAGCAAGAGGAACCAGAGAAACTTCAACAAGAAGATTAAGTATGCGTGTAGGAAGACATTGGCAGACAGTCGGCCGCGCATCAGAGGGCGGTTTGCGAGGAACGAGGAAATTGAGAAGGGTTCGCAGAGTCAGTGGAGTAACTTAGGAGGGGAGGAATGCGAGGAAGATGATGATAATTGGACCAATTTTCTGGATGCATTTTCAGCGAATCTAGTGCCCTAA 756 0.537 MYGHTNHSLFSDFLGHFPASDVPPPPFVFPVAPPPPPPPPHLSLSAVDDFDSVSISDALLPHNSDLGNSCSSGGSSSSLTTSYSTQRPSFIQRSVSSHSLQHNGRHPHPISLVSEFLESESPVRRVYSTGDLQRINMMQHHHRPEISISNDTSIIEGMMTKASRYSPEEKKERIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNEEIEKGSQSQWSNLGGEECEEDDDNWTNFLDAFSANLVP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0402 251 MobiDBLite consensus disorder prediction 64 85 - -
Vvi6g0402 251 Pfam CCT motif 171 212 IPR010402 GO:0005515
Vvi6g0402 251 ProSiteProfiles CCT domain profile. 170 212 IPR010402 GO:0005515
Vvi6g0402 251 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 62 219 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0402 Vvi-Chr6 4819054 4820348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0402 162 226 C2C2-CO-like Transcription Factor Family AT5G15850 40.000 5.23e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi6g0402 CCT 2.3e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0402 - - vvi:104879557 435.261