Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0393 ATGTCTCCAGCAGCCTCATCAAGGTGGTGTCCAACCCCAGAGCAGCTCATGATCTTGGAGGAAATGTATAGGGGAGGAGTGAGAACACCCAATGCTTCTCAGATTCAACAGATCACTGCCCACCTCTCTTTCTATGGCAAGATTGAAGGCAAGAACGTCTTCTACTGGTTTCAGAATCACAAAGCAAGAGACAGACAGAAGCTCCGCAGGAAACTTAGCAAGCAGCTGCAGCAACAACAACAGTTTCACCAACACCATCACCAGCCGCTGCAGCAACAAAATCAACGCAATCAACCCCTCCTTCATTACCTTGACCCTCCTGTCTATTCTGCTTTCCATCAACTTTTCAATTATAACACAAGCCCCTTTCTTCCTCAGGTGATTCTAATTCTAATATAA 399 0.4586 MSPAASSRWCPTPEQLMILEEMYRGGVRTPNASQIQQITAHLSFYGKIEGKNVFYWFQNHKARDRQKLRRKLSKQLQQQQQFHQHHHQPLQQQNQRNQPLLHYLDPPVYSAFHQLFNYNTSPFLPQVILILI* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0393 132 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Vvi6g0393 132 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 97 IPR044555 GO:0003700|GO:0099402
Vvi6g0393 132 CDD homeodomain 8 67 IPR001356 GO:0003677
Vvi6g0393 132 SUPERFAMILY Homeodomain-like 7 66 IPR009057 -
Vvi6g0393 132 Gene3D - 2 67 - -
Vvi6g0393 132 SMART HOX_1 4 71 IPR001356 GO:0003677
Vvi6g0393 132 FunFam WUSCHEL-related homeobox 4 6 73 - -
Vvi6g0393 132 Pfam Homeodomain 6 66 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0393 Vvi-Chr6 4759942 4760340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0393 1 74 Wox Gene Family AT2G28610 87.838 3.27e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi6g0393 Homeodomain 7.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0393 - - vvi:100260450 203.756