Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0385 ATGGAAGCTTCGGATGATTCAGCGAAGTCGCCTTCACTCATTCCACCATTGCCCAGAGACTCGCGGGGCTCACTCGAAGTGTTCAACCCTTCCACCTACTCTACCAGACCCACCAACCAGGCGTTTCGGCCACAACCCACCTGGAAAAGCTGGGCAGAGCCGCGTGGGACTCCTGAACGAGAGGGTTCTCCCGAGCTATCCTCGAAGTCAGGTCGCTCCGCCGACGAGATCACCTCATGGATGGCACTCAAGGAGCCTTCCCCGGCACCTCCGTTGCCCCTCGCCCAGAAGTCCGTATCCCCCGCGTTCAACGTCCAGGACGACACCCGCCAGAAACCGACGCGGAAGACCCAGCTGTCCGGCGAAGTGGACAATGCCGCGCAGCGGGCGGCGGAGTGGGGACTGATGCTGAAGACTGACACCGAGACTGGGAAGCCACAGGGGGTCGCAGTGAGGACTTCCGGCGGCGACGAGCCCAACTACAAAACCGGGACCTCCAGGAGGAACTCCGGAAACTCAGTGCGGAGCTCAGGAGAGATGTCGGACGAGGGCGGTGCTGGGAAGGACAGAGCGTTTCCGAGAGTTTCAGAGGACTTGAAGGATGCATTGTCAACCTTCCAACAGACGTTCGTGGTGTCGGATGCAACCAAACCCGATTATCCGATCTTGTACGCGAGTGCCGGTTTCTTCAAGATGACGGGTTACACCTCCAAAGAGGTGATAGGGAGGAACTGTCGGTTTCTACAAGGGTCTGGCACGGACCCAGAAGATGTGGCAAAGATTAGGGAGGCGTTGCATGCGGGAAACAGTTACTGTGGAAGGCTGCTTAATTACAAGAAGGATGGCACTCCCTTTTGGAACCTTCTCACCATTTCCCCCATCAAGGATGAAAATGGAAACGTCCTCAAATTTATTGGAATGCAAGTAGAGGTGAGCAAGCATACAGAGGGGTCCAAAGAAAAGATGACTCGCCCCAATGGGCTGCCAGAATCATTGATTCGTTATGATGCTCGTCAGAAAGATATGGCTACCAATTCAGTATCTGAACTTGTGCAAGCAGTGAAGAAACCCCGGTCACTCAGTGAATCATCAGATCGCCCCTTCATGAGAAAATCAGAAGATGGTGAACAGGAGAGACCAGAAGCTCCTGGAAGGCGAAACTCAGAGAGTGTGGCTCCACCGAGACGGAATTCACAAAGTGGTCGTAGAGCCTCCATGCAAAGAATCAGTGAGTTGCCTGAAAAGAAGCCGAGAAAATCTAGTCGCCTTTCTTTCATGAGGATTATGAGGAAAAGTCAAGCCCACACTGAAGAATTTGATACTGAAGTTCTTGTGGATGACACCTCCGATAGTGAAGATGATGAGAGGCCTGACAGCATTGATAACAAAACAAGACAAAGGGAAATGAGAAGAGGTATTGATCTGGCCACCACGCTTGAACGTATAGAGAAGAACTTTGTCATCACTGATCCCAGACTGCCTGATAATCCCATTATATTCGCATCTGATAGCTTCTTGGAACTAACAGAATACAGTCGTGAAGAAATTTTGGGAAGAAATTGCAGGTTCCTCCAAGGCCCTGAGACAGATCCTGCGACAGTGAGGAAAATCAGAGAGGCAATTGACAACCAAACAGATGTTACTGTGCAGCTAATTAACTACACAAAAAGCGGGAAGAAGTTCTGGAACCTGTTCCATCTGCAGCCTATGCGTGATCAGAAGGGAGAAGTACAATATTTTATTGGGGTACAACTAGATGGAAGTGAACATGTGGAACCTCTTCACAACTGTATTCCAGAATCCACTGCAAAAGAGAGTGCAAAACTGGTGAAAGAAACTGCAGAAAATATTGATGATGCTGTGAGAGAACTTCCAGATGCCAATTTGAAACCAGAGGATTTGTGGAGTAATCATTCAAAGGTTGTTCTTCCCAAGCCTCATAGGAAGGAAAGCTCCGCATGGAAAGCTATCCAAAAGATTCTAGAAGATGGAGAACAGATAGGCCTGAAACACTTTAGGCCAGTAAAACCGTTGGGATCTGGTGACACTGGCAGTGTGCATCTGGTGGAATTATGTGGAACTGGTGAATACTTTGCCATGAAAGCTATGGATAAAAATGTCATGCTCAACCGCAACAAGGTGCATAGAGCTTGTGCTGAAAGAGAAATTCTTGACATGTTGGATCACCCTTTTCTTCCCGCATTATATGCTTCATTTCAGACTAAAACACATATATGTCTGATTACCGATTACTGCCCTGGTGGAGAGCTCTTCCTGCTTTTGGACAGGCAACCCACAAAAGTCTTGAAGGAAGATGCTGTGAGATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAGGTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGGGCATGTGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGCTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAGAACCCAATATTCATGGCTGAACCTATGCGAGCATCAAATTCATTCGTTGGTACTGAAGAGTACATAGCTCCGGAAATCATAACTGGGGCGGGGCACACTAGTGCAGTGGACTGGTGGGCTCTTGGCATTCTTCTATATGAAATGCTTTATGGATATACACCATTTAGGGGAAAGACAAGGCAAAAGACATTTGCCAACATTCTTCACAAAGATCTTAAATTTCCATCAAGTATATCGGTAAGTCTCAATGCAAAGCAGTTAATGTACCGGTTGCTGCATAGGGATCCCAAGAATAGATTGGGTTCGCGTGAAGGAGCAAATGAAATCAAGCGACACCCATTCTTTCGTGGTGTCAATTGGGCTCTAGTCCGCTGCATGAACCCTCCTGAGCTTGATGCTCCTCCCTTGGAGACAACTGATGCTGAAAAGGAAGTTAAATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAA 3015 0.476 MEASDDSAKSPSLIPPLPRDSRGSLEVFNPSTYSTRPTNQAFRPQPTWKSWAEPRGTPEREGSPELSSKSGRSADEITSWMALKEPSPAPPLPLAQKSVSPAFNVQDDTRQKPTRKTQLSGEVDNAAQRAAEWGLMLKTDTETGKPQGVAVRTSGGDEPNYKTGTSRRNSGNSVRSSGEMSDEGGAGKDRAFPRVSEDLKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTDPEDVAKIREALHAGNSYCGRLLNYKKDGTPFWNLLTISPIKDENGNVLKFIGMQVEVSKHTEGSKEKMTRPNGLPESLIRYDARQKDMATNSVSELVQAVKKPRSLSESSDRPFMRKSEDGEQERPEAPGRRNSESVAPPRRNSQSGRRASMQRISELPEKKPRKSSRLSFMRIMRKSQAHTEEFDTEVLVDDTSDSEDDERPDSIDNKTRQREMRRGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSEHVEPLHNCIPESTAKESAKLVKETAENIDDAVRELPDANLKPEDLWSNHSKVVLPKPHRKESSAWKAIQKILEDGEQIGLKHFRPVKPLGSGDTGSVHLVELCGTGEYFAMKAMDKNVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHICLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGVIYRDLKPENVLLQSSGHVALTDFDLSCLTSCKPQLLMPNTNEKKRQHKGQQNPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSISVSLNAKQLMYRLLHRDPKNRLGSREGANEIKRHPFFRGVNWALVRCMNPPELDAPPLETTDAEKEVKSVDPELLDLQTNIF* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0385 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Vvi6g0385 1004 MobiDBLite consensus disorder prediction 312 331 - -
Vvi6g0385 1004 Gene3D Phosphorylase Kinase; domain 1 671 755 - -
Vvi6g0385 1004 ProSiteProfiles PAC domain profile. 269 323 IPR000700 -
Vvi6g0385 1004 FunFam LOV domain-containing protein 671 755 - -
Vvi6g0385 1004 MobiDBLite consensus disorder prediction 140 191 - -
Vvi6g0385 1004 ProSiteProfiles PAC domain profile. 545 599 IPR000700 -
Vvi6g0385 1004 Pfam Protein kinase domain 675 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0385 1004 Pfam PAS domain 216 312 IPR000014 -
Vvi6g0385 1004 Pfam PAS domain 494 586 IPR000014 -
Vvi6g0385 1004 Gene3D PAS domain 209 365 - -
Vvi6g0385 1004 NCBIfam PAS domain S-box protein 222 316 IPR000014 -
Vvi6g0385 1004 NCBIfam PAS domain S-box protein 496 590 IPR000014 -
Vvi6g0385 1004 MobiDBLite consensus disorder prediction 350 425 - -
Vvi6g0385 1004 MobiDBLite consensus disorder prediction 25 46 - -
Vvi6g0385 1004 CDD PAS 486 586 IPR000014 -
Vvi6g0385 1004 ProSiteProfiles PAS repeat profile. 195 266 IPR000014 -
Vvi6g0385 1004 Gene3D PAS domain 459 624 - -
Vvi6g0385 1004 CDD STKc_phototropin_like 670 979 - -
Vvi6g0385 1004 MobiDBLite consensus disorder prediction 391 406 - -
Vvi6g0385 1004 SMART serkin_6 672 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0385 1004 ProSiteProfiles Protein kinase domain profile. 672 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0385 1004 FunFam Putative LOV domain-containing protein 756 971 - -
Vvi6g0385 1004 SUPERFAMILY PYP-like sensor domain (PAS domain) 216 308 IPR035965 -
Vvi6g0385 1004 MobiDBLite consensus disorder prediction 359 385 - -
Vvi6g0385 1004 FunFam LOV domain-containing protein 460 624 - -
Vvi6g0385 1004 ProSitePatterns Protein kinases ATP-binding region signature. 678 701 IPR017441 GO:0005524
Vvi6g0385 1004 CDD PAS 222 311 IPR000014 -
Vvi6g0385 1004 FunFam Putative LOV domain-containing protein 209 365 - -
Vvi6g0385 1004 SMART pas_2 197 266 IPR000014 -
Vvi6g0385 1004 SMART pas_2 473 542 IPR000014 -
Vvi6g0385 1004 MobiDBLite consensus disorder prediction 158 179 - -
Vvi6g0385 1004 MobiDBLite consensus disorder prediction 1 125 - -
Vvi6g0385 1004 PANTHER FLIPPASE KINASE 1-RELATED 154 982 - -
Vvi6g0385 1004 SUPERFAMILY PYP-like sensor domain (PAS domain) 487 586 IPR035965 -
Vvi6g0385 1004 SMART pac_2 272 314 IPR001610 -
Vvi6g0385 1004 SMART pac_2 548 590 IPR001610 -
Vvi6g0385 1004 ProSiteProfiles PAS repeat profile. 471 544 IPR000014 -
Vvi6g0385 1004 Gene3D Transferase(Phosphotransferase) domain 1 756 969 - -
Vvi6g0385 1004 MobiDBLite consensus disorder prediction 437 465 - -
Vvi6g0385 1004 SUPERFAMILY Protein kinase-like (PK-like) 653 981 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0385 Vvi-Chr6 4660945 4674679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0385 17 1004 AGC Kinase Gene Family AT3G45780 73.081 0.0 1446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vvi6g0385 Pkinase 1.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0385 K20715 - vvi:100262213 2022.67